Factsheet for HORVU6Hr1G015410.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	88.08	93.12
TraesCSU01G113400.1	Wheat	nucleus	87.8	92.31
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	86.72	91.17
Os02t0130300-02	Rice	cytosol, nucleus, plastid	56.91	61.22
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	57.72	58.36
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	51.49	53.37
CDY34127	Canola	extracellular	7.59	46.67
KRH69583	Soybean	nucleus	37.67	41.25
KRH74575	Soybean	cytosol	37.67	41.25
PGSC0003DMT400035059	Potato	nucleus	35.77	39.76
Bra019910.1-P	Field mustard	nucleus, plastid	31.71	38.49
Solyc05g005210.2.1	Tomato	nucleus	34.69	38.32
VIT_01s0127g00360.t01	Wine grape	nucleus	35.23	36.83
CDX93396	Canola	cytosol	33.33	36.61
CDY37958	Canola	cytosol, plastid	33.06	35.99
AT1G10650.1	Thale cress	nucleus	33.06	35.99
CDY24542	Canola	nucleus	31.71	35.78
Bra031495.1-P	Field mustard	nucleus	31.71	35.78
CDY20611	Canola	nucleus	32.79	35.48
CDY20963	Canola	nucleus	32.25	35.21
Bra018428.1-P	Field mustard	nucleus	32.25	35.21
AT1G60610.4	Thale cress	nucleus	31.71	34.41
HORVU4Hr1G061210.1	Barley	cytosol	26.29	23.49
HORVU6Hr1G066640.4	Barley	nucleus	21.41	23.03
HORVU1Hr1G054930.3	Barley	cytosol	17.89	20.12
HORVU7Hr1G100540.2	Barley	mitochondrion	15.45	18.75
HORVU6Hr1G021960.1	Barley	plastid	13.01	18.39
HORVU6Hr1G021880.1	Barley	plastid	13.01	18.39
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	15.18	18.24
HORVU4Hr1G003180.3	Barley	mitochondrion	15.18	18.24

Protein Annotations

EnsemblPlants:HORVU6Hr1G015410.5	EnsemblPlantsGene:HORVU6Hr1G015410	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF9	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000B474B9D	UniProt:A0A287TER2	MapMan:35.1

Description

No Description!

Coordinates

chrchr6H:-:33726500..33730197

Molecular Weight (calculated)

39804.9 Da

IEP (calculated)

7.623

GRAVY (calculated)

-0.501

Length

369 amino acids

Sequence
(BLAST)

001: LRRPAGHGGN RWQGKDTAME GHVFGGGSWG PSPYPGSNAN VNISADENQL LFGAKAAPPQ LQLFGSNVVG TSGYYSYNGN DNPYVMNQPR KTSNCAADEK
101: KLKLQMSLNN FHAGDADRLA CTGNSSVVST GLKLSYEDNE RNSSFTSGSG SMSSLTSTTP FGHDIMTEME KGNKEIDYYL RSQVEQLSRR VKEMKQKQMV
201: SLVATLERGV GKKLREKELE VEAMNRKSQE LNEQIRQVAM QVQSWQSAAL YNESVASTLK SQLMQVVADH ANRTREGCGD SEVESAAASG QKNINAAPGG
301: FFESSLLPGV KSGVAGSGLA ACRWCGAKEV AVLVMPCRHL CLCADCDRVT DACPVCQYPK SGSVEINMS

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.