Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24542 | Canola | nucleus | 100.0 | 18.35 |
| CDY37958 | Canola | cytosol, plastid | 76.67 | 13.57 |
| CDX93396 | Canola | cytosol | 75.0 | 13.39 |
| CDY20611 | Canola | nucleus | 73.33 | 12.9 |
| CDY20963 | Canola | nucleus | 71.67 | 12.72 |
| CDY21311 | Canola | cytosol | 36.67 | 9.4 |
| CDY09318 | Canola | cytosol | 36.67 | 9.4 |
| CDY07541 | Canola | cytosol | 36.67 | 9.4 |
| CDX94520 | Canola | cytosol | 36.67 | 9.4 |
| CDY37172 | Canola | cytosol | 45.0 | 8.94 |
| CDY09609 | Canola | cytosol | 36.67 | 8.91 |
| CDY33511 | Canola | nucleus | 43.33 | 8.58 |
| CDY51856 | Canola | cytosol | 43.33 | 8.58 |
| CDY51918 | Canola | cytosol | 40.0 | 8.36 |
| CDX77733 | Canola | nucleus | 41.67 | 8.33 |
| CDY43447 | Canola | nucleus | 41.67 | 8.28 |
| CDY71192 | Canola | cytosol | 38.33 | 8.21 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 46.67 | 7.98 |
| CDY13070 | Canola | cytosol | 36.67 | 7.89 |
| CDY01615 | Canola | cytosol | 40.0 | 7.87 |
| CDY71607 | Canola | cytosol | 40.0 | 7.84 |
| CDX69109 | Canola | nucleus | 26.67 | 7.8 |
| CDY03162 | Canola | cytosol | 41.67 | 7.76 |
| CDX88507 | Canola | nucleus | 38.33 | 7.72 |
| CDY52651 | Canola | cytosol | 28.33 | 7.69 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 46.67 | 7.59 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 43.33 | 7.45 |
| CDY18062 | Canola | cytosol | 35.0 | 7.45 |
| CDY46345 | Canola | cytosol | 35.0 | 7.45 |
| CDY17103 | Canola | cytosol | 36.67 | 7.43 |
| TraesCSU01G113400.1 | Wheat | nucleus | 43.33 | 7.41 |
| CDY40841 | Canola | cytosol | 36.67 | 7.36 |
| CDX87407 | Canola | nucleus | 38.33 | 7.28 |
| CDX72513 | Canola | cytosol | 28.33 | 7.26 |
| CDX79294 | Canola | nucleus | 36.67 | 7.24 |
| CDX90458 | Canola | cytosol | 36.67 | 7.24 |
| CDY06767 | Canola | cytosol | 36.67 | 7.24 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 43.33 | 7.12 |
| CDY24237 | Canola | nucleus | 38.33 | 7.1 |
| CDY26402 | Canola | cytosol | 35.0 | 7.09 |
| CDY43390 | Canola | cytosol | 38.33 | 7.08 |
| CDY17048 | Canola | cytosol | 36.67 | 7.07 |
| CDY64561 | Canola | nucleus | 40.0 | 7.06 |
| CDX82568 | Canola | nucleus | 40.0 | 7.06 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 41.67 | 7.02 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 40.0 | 7.0 |
| CDY40647 | Canola | cytosol | 26.67 | 6.81 |
| CDY15019 | Canola | cytosol | 28.33 | 6.77 |
| CDX73168 | Canola | cytosol | 28.33 | 6.77 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 28.33 | 6.72 |
| CDX76311 | Canola | cytosol | 28.33 | 6.72 |
| CDY23552 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY34127 | EnsemblPlantsGene:GSBRNA2T00056085001 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF8 | PFAM:PF13920 | ProteinID:CDY34127 | ProteinID:CDY34127.1 | UniParc:UPI0004EDCF94 | UniProt:A0A078H942 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC01g28670DBnaC01g28670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H942]
Coordinates
chrLK032329:-:222320..222502
Molecular Weight (calculated)
6621.2 Da
IEP (calculated)
8.291
GRAVY (calculated)
0.323
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MNIPGMPNTG MRCKSCNVKE VSVLLVPCRH LSLCKDCDVF TGFCPVCQSF KTSSVQVFFS
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.