Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88507 | Canola | nucleus | 69.41 | 70.81 |
| CDX87407 | Canola | nucleus | 68.42 | 65.82 |
| AT1G79110.1 | Thale cress | nucleus | 73.03 | 62.01 |
| KRH43767 | Soybean | nucleus | 41.45 | 49.8 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 45.39 | 44.66 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 27.3 | 44.15 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 32.89 | 43.48 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 33.88 | 42.21 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 34.21 | 42.11 |
| KRH13682 | Soybean | nucleus | 44.74 | 40.36 |
| CDY43390 | Canola | cytosol | 42.76 | 40.0 |
| CDX94520 | Canola | cytosol | 30.59 | 39.74 |
| CDY21311 | Canola | cytosol | 30.59 | 39.74 |
| CDY07541 | Canola | cytosol | 30.59 | 39.74 |
| CDY09318 | Canola | cytosol | 30.59 | 39.74 |
| CDY24237 | Canola | nucleus | 41.78 | 39.2 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 36.84 | 39.16 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 30.26 | 38.17 |
| CDY64561 | Canola | nucleus | 42.43 | 37.94 |
| CDX82568 | Canola | nucleus | 42.11 | 37.65 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 36.18 | 36.91 |
| CDY34127 | Canola | extracellular | 7.24 | 36.67 |
| CDY51918 | Canola | cytosol | 34.21 | 36.24 |
| CDY26402 | Canola | cytosol | 35.2 | 36.15 |
| CDY01615 | Canola | cytosol | 34.54 | 34.43 |
| CDY71607 | Canola | cytosol | 34.54 | 34.31 |
| CDY71192 | Canola | cytosol | 31.25 | 33.93 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.87 | 33.02 |
| CDY13070 | Canola | cytosol | 30.26 | 32.97 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 25.66 | 32.64 |
| CDY18062 | Canola | cytosol | 29.61 | 31.91 |
| CDY46345 | Canola | cytosol | 29.61 | 31.91 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 30.59 | 29.71 |
| TraesCS3B01G484600.1 | Wheat | cytosol | 26.64 | 29.45 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 29.61 | 29.32 |
| CDY23552 | Canola | cytosol | 20.72 | 29.03 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 29.93 | 28.98 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 27.63 | 28.97 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 27.63 | 28.97 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 25.0 | 28.9 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 28.62 | 28.71 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 24.67 | 28.52 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 29.61 | 28.39 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 28.95 | 28.21 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 24.34 | 28.14 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 26.97 | 27.99 |
| HORVU6Hr1G021960.1 | Barley | plastid | 24.01 | 27.97 |
| HORVU6Hr1G021880.1 | Barley | plastid | 24.01 | 27.97 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 28.95 | 27.94 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 28.62 | 27.88 |
| CDX69109 | Canola | nucleus | 18.75 | 27.8 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 28.29 | 27.74 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 27.96 | 27.69 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 27.96 | 27.6 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 27.3 | 27.3 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 27.63 | 27.27 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 28.29 | 27.22 |
| EER91098 | Sorghum | nucleus | 31.58 | 27.04 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 27.63 | 26.75 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 28.95 | 26.67 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 23.68 | 26.57 |
| CDY40647 | Canola | cytosol | 20.39 | 26.38 |
| CDY52651 | Canola | cytosol | 19.08 | 26.24 |
| CDX72513 | Canola | cytosol | 19.41 | 25.21 |
| CDY15019 | Canola | cytosol | 19.74 | 23.9 |
| CDX73168 | Canola | cytosol | 19.74 | 23.9 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 19.74 | 23.72 |
| CDX76311 | Canola | cytosol | 19.08 | 22.92 |
| CDY43447 | Canola | nucleus | 22.37 | 22.52 |
| Zm00001d033419_P001 | Maize | plastid | 20.72 | 22.5 |
| CDY09609 | Canola | cytosol | 18.09 | 22.27 |
| CDY17103 | Canola | cytosol | 21.38 | 21.96 |
| CDY33511 | Canola | nucleus | 21.71 | 21.78 |
| CDY06767 | Canola | cytosol | 21.71 | 21.71 |
| CDX77733 | Canola | nucleus | 21.38 | 21.67 |
| CDY40841 | Canola | cytosol | 21.05 | 21.4 |
| CDY17048 | Canola | cytosol | 21.38 | 20.9 |
| CDY03162 | Canola | cytosol | 22.04 | 20.81 |
| CDY51856 | Canola | cytosol | 20.72 | 20.79 |
| CDX93396 | Canola | cytosol | 22.7 | 20.54 |
| CDY37172 | Canola | cytosol | 20.39 | 20.53 |
| CDY37958 | Canola | cytosol, plastid | 22.7 | 20.35 |
| CDX90458 | Canola | cytosol | 20.07 | 20.07 |
| CDY20963 | Canola | nucleus | 22.04 | 19.82 |
| CDY20611 | Canola | nucleus | 22.04 | 19.65 |
| CDY24542 | Canola | nucleus | 21.05 | 19.57 |
Protein Annotations
| EnsemblPlants:CDX79294 | EnsemblPlantsGene:GSBRNA2T00131945001 | Gene3D:3.30.40.10 | GO:A0A078CTC4 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF7 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:CDX79294 | ProteinID:CDX79294.1 | SEG:seg | UniParc:UPI0004EB97C1 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC06g20090D
Coordinates
chrLK031817:+:1109176..1110162
Molecular Weight (calculated)
33628.4 Da
IEP (calculated)
5.588
GRAVY (calculated)
-0.448
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPTNAGYCT NNQTGYGVVS TDYSPPLLNM YGVSSTVDTV PTTTDSFTYY GANVDCDVIP LPSSRDATSD YYHQNPRSLS STSVPPTNPF SFLGQDIDIS
101: SHINQQQHDI DRFVSLHMER VRFEVQEKRK RQARTIMEAI EHGLVKRLRV KEEEGERIWK INHALGERVK SLSTENQIWR DLAQTNEVTA NSLRNNLEQV
201: LAQVKDSGAG LDSDDAESCC GSSAGEETVR RMVAIEALDK AAKGRMCRNC GEQESCVLLL PCRHLCLCGV CGSSVHTCPI CSSPKNASVH LDPVYGNSSS
301: FFFC
101: SHINQQQHDI DRFVSLHMER VRFEVQEKRK RQARTIMEAI EHGLVKRLRV KEEEGERIWK INHALGERVK SLSTENQIWR DLAQTNEVTA NSLRNNLEQV
201: LAQVKDSGAG LDSDDAESCC GSSAGEETVR RMVAIEALDK AAKGRMCRNC GEQESCVLLL PCRHLCLCGV CGSSVHTCPI CSSPKNASVH LDPVYGNSSS
301: FFFC
001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS
Arabidopsis Description
BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.