CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13682	Soybean	nucleus	89.72	67.36
VIT_19s0027g00740.t01	Wine grape	nucleus	54.15	44.34
CDX88507	Canola	nucleus	51.78	43.96
GSMUA_Achr4P23050_001	Banana	nucleus	32.41	43.62
GSMUA_Achr7P00850_001	Banana	plastid	38.74	42.61
GSMUA_Achr2P13160_001	Banana	plastid	41.5	42.51
GSMUA_Achr5P02100_001	Banana	plastid	40.32	41.8
CDX79294	Canola	nucleus	49.8	41.45
CDX87407	Canola	nucleus	50.99	40.82
Bra035092.1-P	Field mustard	nucleus	50.99	40.82
GSMUA_Achr4P28300_001	Banana	nucleus	37.15	39.0
GSMUA_Achr4P32070_001	Banana	nucleus	43.48	38.46
KRH36722	Soybean	nucleus	45.45	37.1
AT3G12920.1	Thale cress	nucleus	49.01	37.01
AT1G79110.1	Thale cress	nucleus	51.78	36.59
KRH11729	Soybean	nucleus	45.06	36.42
KRG89416	Soybean	nucleus	44.27	35.67
CDY24237	Canola	nucleus	45.06	35.19
CDY43390	Canola	cytosol	45.06	35.08
Bra039354.1-P	Field mustard	cytosol	45.06	35.08
CDY64561	Canola	nucleus	47.04	35.0
KRH50476	Soybean	cytosol, nucleus, plastid	43.87	34.69
GSMUA_Achr6P31690_001	Banana	nucleus	40.71	34.56
Bra001477.1-P	Field mustard	nucleus	46.25	34.41
CDX82568	Canola	nucleus	46.25	34.41
Bra034718.1-P	Field mustard	nucleus	45.45	34.12
GSMUA_Achr9P09830_001	Banana	nucleus	41.9	33.02
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	30.43	32.22
TraesCS3B01G484600.1	Wheat	cytosol	32.81	30.18
TraesCS3D01G441300.1	Wheat	mitochondrion	32.81	28.62
TraesCS3A01G448500.1	Wheat	mitochondrion	32.81	28.33
TraesCS3D01G441000.1	Wheat	mitochondrion	32.41	28.28
HORVU4Hr1G003180.3	Barley	mitochondrion	33.99	28.01
TraesCS7D01G431300.1	Wheat	mitochondrion	33.99	27.48
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	32.81	27.39
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	29.25	27.31
HORVU6Hr1G021960.1	Barley	plastid	27.67	26.82
HORVU6Hr1G021880.1	Barley	plastid	27.67	26.82
TraesCS4B01G019600.1	Wheat	mitochondrion	32.81	26.77
HORVU7Hr1G100540.2	Barley	mitochondrion	32.02	26.64
TraesCS7A01G442300.1	Wheat	mitochondrion	33.2	26.5
TraesCS7A01G442100.1	Wheat	mitochondrion	32.81	26.43
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	32.02	26.38
TraesCS7B01G340600.1	Wheat	mitochondrion	32.41	26.28
EER91098	Sorghum	nucleus	36.76	26.2
TraesCS4A01G293700.1	Wheat	mitochondrion	31.62	25.97
TraesCS7B01G340700.1	Wheat	mitochondrion	32.02	25.96
TraesCS6A01G120700.1	Wheat	nucleus	26.88	25.86
TraesCS6D01G110700.1	Wheat	nucleus	26.88	25.86
TraesCS7B01G340500.1	Wheat	mitochondrion	32.02	25.71
TraesCS6B01G149100.1	Wheat	nucleus	26.48	25.48
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	33.2	25.45
TraesCS7A01G441900.1	Wheat	mitochondrion	30.83	24.68
TraesCS7D01G431200.1	Wheat	mitochondrion	30.04	24.68
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	30.43	24.52
CDY23552	Canola	cytosol	20.95	24.42
KRH77271	Soybean	plastid	28.46	22.36
KRH51394	Soybean	nucleus	24.51	21.6
KRH28216	Soybean	nucleus	28.06	21.58
KRH60696	Soybean	nucleus, plastid	24.51	21.23
Zm00001d033419_P001	Maize	plastid	23.32	21.07
KRH57556	Soybean	nucleus	28.46	20.57
KRH69583	Soybean	nucleus	27.27	20.47
KRG94235	Soybean	cytosol	19.76	20.16
KRH15376	Soybean	nucleus, plastid	27.67	19.94
KRH04275	Soybean	nucleus	28.06	19.89
KRH74575	Soybean	cytosol	26.48	19.88
KRH05668	Soybean	nucleus	26.48	19.59
KRH29000	Soybean	cytosol	21.74	19.16
KRH24321	Soybean	cytosol	21.74	19.1

Protein Annotations

EMBL:ACUP02004895	EnsemblPlants:KRH43767	EnsemblPlantsGene:GLYMA_08G170400	EntrezGene:100809593	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647
PANTHER:PTHR42647:SF7	PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:KRH43767	ProteinID:KRH43767.1
SEG:seg	UniParc:UPI000233856D	UniProt:I1KU26	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:-:13574125..13576169

Molecular Weight (calculated)

28101.5 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.581

Length

253 amino acids

Sequence
(BLAST)

001: MTPTSRKRSR DNSNNYGYNN NINNDSFSFL GQDVSLQIQQ QQLDIEHLIM QRMEKVRMEI DEKRKRQARR FIEAIEVGVM KKLKAKEEEI EKIGKLNWAL
101: EEKVKHLCME NQVWRNLAEA NEATANALRC NLEQVLAQCG GIAAEEDRGG ATVCGGAEMD DAESCCGSTE EDCEGKKVGW RTLAGCAGVK DKDEGGESSN
201: GNGRMCRNCG KEESCVLILP CRHLCLCTAC GSSLHICPIC KSFKTASVHV NMS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.