Factsheet for VIT_19s0027g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43767	Soybean	nucleus	44.34	54.15
GSMUA_Achr2P13160_001	Banana	plastid	41.1	51.42
VIT_10s0042g01070.t01	Wine grape	nucleus	49.84	50.83
KRH13682	Soybean	nucleus	55.02	50.45
GSMUA_Achr7P00850_001	Banana	plastid	37.54	50.43
GSMUA_Achr5P02100_001	Banana	plastid	38.19	48.36
GSMUA_Achr4P32070_001	Banana	nucleus	44.01	47.55
GSMUA_Achr4P23050_001	Banana	nucleus	28.48	46.81
CDX88507	Canola	nucleus	44.01	45.64
CDX79294	Canola	nucleus	44.66	45.39
GSMUA_Achr4P28300_001	Banana	nucleus	34.95	44.81
AT3G12920.1	Thale cress	nucleus	48.54	44.78
Bra035092.1-P	Field mustard	nucleus	45.63	44.62
CDX87407	Canola	nucleus	45.63	44.62
CDY43390	Canola	cytosol	46.6	44.31
Bra039354.1-P	Field mustard	cytosol	46.6	44.31
GSMUA_Achr6P31690_001	Banana	nucleus	42.39	43.96
CDY24237	Canola	nucleus	45.63	43.52
AT1G79110.1	Thale cress	nucleus	48.54	41.9
CDY64561	Canola	nucleus	45.63	41.47
Bra034718.1-P	Field mustard	nucleus	44.98	41.25
CDX82568	Canola	nucleus	44.66	40.59
Bra001477.1-P	Field mustard	nucleus	44.66	40.59
GSMUA_Achr9P09830_001	Banana	nucleus	41.1	39.56
TraesCS3D01G441300.1	Wheat	mitochondrion	33.33	35.52
CDY23552	Canola	cytosol	24.92	35.48
TraesCS3D01G441000.1	Wheat	mitochondrion	33.01	35.17
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	26.86	34.73
TraesCS3B01G484600.1	Wheat	cytosol	30.74	34.55
TraesCS3A01G448500.1	Wheat	mitochondrion	32.36	34.13
HORVU4Hr1G003180.3	Barley	mitochondrion	33.33	33.55
TraesCS7D01G431300.1	Wheat	mitochondrion	33.98	33.55
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	32.69	33.33
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	32.69	32.9
TraesCS7B01G340500.1	Wheat	mitochondrion	33.33	32.7
TraesCS7B01G340600.1	Wheat	mitochondrion	33.01	32.69
TraesCS7A01G442100.1	Wheat	mitochondrion	33.01	32.48
TraesCS7A01G441900.1	Wheat	mitochondrion	32.69	31.96
HORVU7Hr1G100540.2	Barley	mitochondrion	31.39	31.91
TraesCS7A01G442300.1	Wheat	mitochondrion	32.69	31.86
TraesCS4B01G019600.1	Wheat	mitochondrion	31.72	31.61
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	32.04	31.53
TraesCS4A01G293700.1	Wheat	mitochondrion	31.39	31.49
TraesCS7D01G431200.1	Wheat	mitochondrion	31.39	31.49
TraesCS7B01G340700.1	Wheat	mitochondrion	31.72	31.41
EER91098	Sorghum	nucleus	35.92	31.27
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	27.18	31.0
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	32.69	30.61
TraesCS6D01G110700.1	Wheat	nucleus	24.92	29.28
VIT_03s0038g02450.t01	Wine grape	nucleus	20.39	29.17
TraesCS6A01G120700.1	Wheat	nucleus	24.6	28.9
TraesCS6B01G149100.1	Wheat	nucleus	23.95	28.14
HORVU6Hr1G021880.1	Barley	plastid	23.3	27.59
HORVU6Hr1G021960.1	Barley	plastid	23.3	27.59
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	29.77	27.3
Zm00001d033419_P001	Maize	plastid	22.65	25.0
VIT_17s0000g08570.t01	Wine grape	nucleus	26.86	24.85
VIT_18s0001g14740.t01	Wine grape	cytosol	22.01	23.78
VIT_01s0127g00360.t01	Wine grape	nucleus	26.21	22.95
VIT_18s0001g10370.t01	Wine grape	nucleus	21.36	20.12

Protein Annotations

EntrezGene:100255881	wikigene:100255881	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM479363	ProteinID:CAN75221
ProteinID:CAN75221.1	ProteinID:CCB47228	ProteinID:CCB47228.1	ncoils:Coil	InterPro:E3ligase_BOI_like	UniProt:F6H4T9
EMBL:FN595234	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100255881	wikigene:LOC100255881	PFAM:PF13920
PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7	TIGR:TC58370	UniParc:UPI0001985703
ArrayExpress:VIT_19s0027g00740	EnsemblPlantsGene:VIT_19s0027g00740	EnsemblPlants:VIT_19s0027g00740.t01	RefSeq:XP_002266864	RefSeq:XP_002266864.2	RefSeq:XP_010644986.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:19949303..19950601

Molecular Weight (calculated)

35258.0 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.606

Length

309 amino acids

Sequence
(BLAST)

001: MAVEARRINL FPSQFIPNKR QVMGSLDGNG VVYGSQVGQR GLVSENLMVP FYSSAFVDPA PAKADSGLTY NLPVARKRAR DESVMMSFPG NFSFLGQDIS
101: LQIQQQQLEI DRFISQHMER VRLEIEERRK RHSRRIIAAV EEALMKRLKA KEEEIENIGK LNWALEERVK SLCEENQIWR DLAQTNEANA NALRNNLEQV
201: LSQVKTEQRQ SRISPCPEYI EMEWAEEAES CCGSTSGGDG DCDRENEEKE SREMDDRNMR WCRNCRKEEA SVLLLPCRHL CLCTICGSTL HTCPICKSNK
301: NASVHVNLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.