Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046745 | Potato | nucleus | 59.88 | 60.24 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 61.38 | 58.07 |
| Solyc03g112860.2.1 | Tomato | nucleus, plastid | 51.2 | 52.94 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 28.14 | 28.66 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 28.44 | 28.19 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 25.15 | 27.72 |
| VIT_03s0038g02450.t01 | Wine grape | nucleus | 17.66 | 27.31 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 24.85 | 26.86 |
| VIT_18s0001g14740.t01 | Wine grape | cytosol | 20.36 | 23.78 |
Protein Annotations
| EntrezGene:100262147 | wikigene:100262147 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM482928 | ProteinID:CAN75320 |
| ProteinID:CAN75320.1 | ProteinID:CBI15014 | ProteinID:CBI15014.3 | ncoils:Coil | UniProt:D7SHQ4 | InterPro:E3ligase_BOI_like |
| EMBL:FN594950 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100262147 | wikigene:LOC100262147 | PFAM:PF13920 |
| PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF9 | UniParc:UPI0001985282 | ArrayExpress:VIT_17s0000g08570 |
| EnsemblPlantsGene:VIT_17s0000g08570 | EnsemblPlants:VIT_17s0000g08570.t01 | unigene:Vvi.5193 | RefSeq:XP_002282390 | RefSeq:XP_002282390.1 | RefSeq:XP_010663157.1 |
| RefSeq:XP_010663158.1 | RefSeq:XP_010663159.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : |
Description
No Description!
Coordinates
chr17:-:9862812..9868286
Molecular Weight (calculated)
37466.6 Da
IEP (calculated)
6.827
GRAVY (calculated)
-0.518
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGGNNNNPV FPVFLEENRY QYDTNAMPQL QLFGDFPVGC GGNPLNYMRN DHANALHGPI KRSREAESFS RHQKLHISLN NNNLCHDEAG QSGSILNPNP
101: VSTGLKLSYE EDEHNSSITS ASDSMTAALP VISSLGDNLK SEIDRQKEEF DHYIRVQEEN IIKGVRELKQ RQTVSFLSSI EKGVGKKLRE KEFEIENMNR
201: KNKELVERVK QVTMEVQSWH YRAKYNESLV NVLKSNLKQV LAQGAMQGKE GCGDSEVDDA ASYTDHIQLG VVGCSGNPTS MKKQVNCRAC KVREVSVLLL
301: PCRHLCLCMD CEGFIDVCPV CRVMKTASVQ VFMS
101: VSTGLKLSYE EDEHNSSITS ASDSMTAALP VISSLGDNLK SEIDRQKEEF DHYIRVQEEN IIKGVRELKQ RQTVSFLSSI EKGVGKKLRE KEFEIENMNR
201: KNKELVERVK QVTMEVQSWH YRAKYNESLV NVLKSNLKQV LAQGAMQGKE GCGDSEVDDA ASYTDHIQLG VVGCSGNPTS MKKQVNCRAC KVREVSVLLL
301: PCRHLCLCMD CEGFIDVCPV CRVMKTASVQ VFMS
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.