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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000304.1-P
Bra001524.1-P
Bra005514.1-P
Bra010231.1-P
Bra010501.1-P
Bra011282.1-P
Bra011662.1-P
Bra013779.1-P
Bra014037.1-P
Bra017747.1-P
Bra019239.1-P
Bra021836.1-P
Bra022931.1-P
Bra023998.1-P
Bra028196.1-P
Bra028662.1-P
Bra032084.1-P
Bra036240.1-P
Bra036335.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G19700.1 Bra014037.1-P AT1G45145.1 21798944
AT4G19700.1 Bra036335.1-P AT1G45145.1 21798944
AT4G19700.1 Bra032084.1-P AT2G24570.1 21798944
AT4G19700.1 Bra005514.1-P AT2G33210.1 21798944
AT4G19700.1 Bra021836.1-P AT2G33210.1 21798944
AT4G19700.1 Bra022931.1-P AT2G33210.1 21798944
AT4G19700.1 Bra000304.1-P AT2G43370.1 21798944
AT4G19700.1 Bra001524.1-P AT3G13860.1 21798944
AT4G19700.1 Bra036240.1-P AT4G02770.1 21798944
AT4G19700.1 Bra013779.1-P AT4G24240.1 21798944
AT4G19700.1 Bra019239.1-P AT4G24240.1 21798944
AT4G19700.1 Bra010231.1-P AT4G31550.1 21798944
AT4G19700.1 Bra011282.1-P AT4G31550.1 21798944
AT4G19700.1 Bra023998.1-P AT4G31550.1 21798944
AT4G19700.1 Bra010501.1-P AT4G36110.1 21798944
AT4G19700.1 Bra011662.1-P AT4G36110.1 21798944
AT4G19700.1 Bra017747.1-P AT4G36110.1 21798944
AT4G19700.1 Bra028662.1-P AT5G08330.1 21798944
AT4G19700.1 Bra028196.1-P AT5G38640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71607 Canola cytosol 99.35 99.35
Bra013423.1-P Field mustard nucleus 77.78 80.41
AT4G19700.1 Thale cress cytosol 77.12 77.63
Bra039533.1-P Field mustard cytosol, nucleus, plastid 58.5 60.47
Bra027588.1-P Field mustard cytosol, nucleus, plastid 53.59 58.78
Bra028364.1-P Field mustard cytosol, nucleus, plastid 51.31 55.67
VIT_10s0042g01070.t01 Wine grape nucleus 44.77 45.21
KRH36722 Soybean nucleus 45.42 44.84
KRH11729 Soybean nucleus 44.77 43.77
KRG89416 Soybean nucleus 44.77 43.63
KRH50476 Soybean cytosol, nucleus, plastid 44.44 42.5
PGSC0003DMT400062617 Potato nucleus 39.54 40.33
PGSC0003DMT400026783 Potato cytosol, mitochondrion, nucleus, plastid, vacuole 41.5 39.32
Solyc02g031710.2.1 Tomato nucleus 38.89 38.39
Bra035092.1-P Field mustard nucleus 38.56 37.34
GSMUA_Achr2P13160_001 Banana plastid 30.07 37.25
GSMUA_Achr5P02100_001 Banana plastid 29.41 36.89
GSMUA_Achr4P32070_001 Banana nucleus 34.31 36.71
GSMUA_Achr4P23050_001 Banana nucleus 22.55 36.7
GSMUA_Achr7P00850_001 Banana plastid 26.47 35.22
GSMUA_Achr4P28300_001 Banana nucleus 27.45 34.85
Bra001477.1-P Field mustard nucleus 38.24 34.41
Bra034718.1-P Field mustard nucleus 37.58 34.12
Bra039354.1-P Field mustard cytosol 35.29 33.23
GSMUA_Achr6P31690_001 Banana nucleus 32.35 33.22
Solyc02g069180.2.1 Tomato plastid 30.39 32.86
TraesCS3A01G448500.1 Wheat mitochondrion 30.72 32.08
TraesCS3D01G441000.1 Wheat mitochondrion 30.39 32.07
TraesCS3D01G441300.1 Wheat mitochondrion 30.39 32.07
TraesCS3B01G484600.1 Wheat cytosol 28.43 31.64
GSMUA_Achr9P09830_001 Banana nucleus 32.68 31.15
TraesCS4D01G018100.1 Wheat mitochondrion, nucleus 30.72 31.02
HORVU4Hr1G003180.3 Barley mitochondrion 31.05 30.94
TraesCS4B01G019600.1 Wheat mitochondrion 31.05 30.65
TraesCS7D01G431300.1 Wheat mitochondrion 31.05 30.35
TraesCS4A01G293700.1 Wheat mitochondrion 30.07 29.87
TraesCS7A01G442300.1 Wheat mitochondrion 30.07 29.02
TraesCS6A01G079900.1 Wheat cytosol, mitochondrion, plastid 22.55 28.87
TraesCS7B01G340600.1 Wheat mitochondrion 29.41 28.85
TraesCS7B01G340700.1 Wheat mitochondrion 29.09 28.53
HORVU6Hr1G021880.1 Barley plastid 24.18 28.35
HORVU6Hr1G021960.1 Barley plastid 24.18 28.35
HORVU7Hr1G100520.1 Barley cytosol, mitochondrion 28.43 28.34
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 30.39 28.18
TraesCS7A01G441900.1 Wheat mitochondrion 28.76 27.85
TraesCS7A01G442100.1 Wheat mitochondrion 28.43 27.71
TraesCS6D01G073600.1 Wheat cytosol, nucleus, plastid 24.51 27.68
TraesCS7B01G340500.1 Wheat mitochondrion 28.43 27.62
EER91098 Sorghum nucleus 32.03 27.61
HORVU7Hr1G100540.2 Barley mitochondrion 27.12 27.3
TraesCS7D01G431200.1 Wheat mitochondrion 27.45 27.27
TraesCS7D01G431100.1 Wheat mitochondrion, nucleus 27.78 27.07
TraesCS6D01G110700.1 Wheat nucleus 22.88 26.62
TraesCS6B01G149100.1 Wheat nucleus 22.88 26.62
TraesCS6A01G120700.1 Wheat nucleus 22.55 26.24
Bra011582.1-P Field mustard cytosol, nucleus, plastid 18.3 25.34
Bra024967.1-P Field mustard plastid 20.26 25.1
Bra017511.1-P Field mustard nucleus 23.53 23.84
Bra034672.1-P Field mustard cytosol 19.28 23.51
Bra040255.1-P Field mustard nucleus 17.32 23.14
Bra017691.1-P Field mustard cytosol, extracellular, nucleus 17.65 22.98
Zm00001d033419_P001 Maize plastid 20.59 22.5
Bra031495.1-P Field mustard nucleus 23.53 22.02
Bra018428.1-P Field mustard nucleus 23.53 21.3
Bra019910.1-P Field mustard nucleus, plastid 20.91 21.05
Bra014051.1-P Field mustard nucleus 18.95 18.65
Bra012650.1-P Field mustard nucleus 19.28 16.91
Bra022093.1-P Field mustard nucleus 10.78 15.0
Protein Annotations
EnsemblPlants:Bra012532.1EnsemblPlants:Bra012532.1-PEnsemblPlantsGene:Bra012532Gene3D:3.30.40.10InterPro:E3ligase_BOI_likeInterPro:IPR001841
InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR42647PANTHER:PTHR42647:SF12PFAM:PF13920
PFscan:PS50089PIRSF:PIRSF036836SEG:segSUPFAM:SSF57850UniParc:UPI0002540444UniProt:M4D7S2
MapMan:35.1:::::
Description
AT4G19700 (E=2e-111) RING | RING; protein binding / zinc ion binding
Coordinates
chrA03:-:23749420..23750477
Molecular Weight (calculated)
33568.8 Da
IEP (calculated)
6.234
GRAVY (calculated)
-0.326
Length
306 amino acids
Sequence
(BLAST)
001: MAVEAHHMNI FSPQLLSDRD CVKLKQDMNH GEFHLPAGEV PFVTGESLAV DPLAKAYFNK SENGPTYNFN SSSVLPPSAK RPRGSQYLDS DAHFASPVKR
101: RSGAFSLTSS LINAELVSQI QNQQQSEIDQ FVAQQTEKLR IEVEARQRTQ TRMLASAVQN AIAKKLKEKD DEIVRMRNLN WILQERVKSL YVENQIWHDM
201: AQTSEAHANN LRTNLDQVLA QIQTLPTAPT VAEDDAESSS GSCVEGGEAI TAVGGGCKRC GEREASVLVL PCRHLCLCTV CGSALLQTCP VCDSVMNASV
301: HVNMSA
Best Arabidopsis Sequence Match ( AT4G19700.1 )
(BLAST)
001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS
Arabidopsis Description
BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.