Factsheet for Bra040255.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06767	Canola	cytosol	97.82	73.68
AT1G45976.1	Thale cress	cytosol	86.03	60.62
Bra014051.1-P	Field mustard	nucleus	81.66	60.13
Solyc04g078760.2.1	Tomato	nucleus	65.5	44.38
KRH05668	Soybean	nucleus	65.5	43.86
KRH15376	Soybean	nucleus, plastid	65.07	42.45
VIT_18s0001g10370.t01	Wine grape	nucleus	58.95	41.16
GSMUA_Achr10P...	Banana	nucleus	56.33	40.57
PGSC0003DMT400020551	Potato	nucleus	65.07	39.84
Os03t0263800-01	Rice	nucleus, plastid	57.64	38.6
Zm00001d047856_P001	Maize	nucleus, plastid	54.59	37.99
EER95135	Sorghum	plastid	55.9	37.98
TraesCS4D01G215600.1	Wheat	plastid	55.46	37.46
TraesCS4A01G089200.1	Wheat	plastid	55.46	37.46
TraesCS4B01G215100.1	Wheat	plastid	55.46	37.46
Zm00001d028532_P001	Maize	nucleus, plastid	55.02	37.39
GSMUA_Achr6P10180_001	Banana	plastid	56.33	37.18
GSMUA_Achr11P...	Banana	nucleus	60.7	37.17
HORVU4Hr1G061210.1	Barley	cytosol	55.9	30.99
Bra024967.1-P	Field mustard	plastid	31.88	29.55
Bra019910.1-P	Field mustard	nucleus, plastid	35.37	26.64
Bra031495.1-P	Field mustard	nucleus	37.99	26.61
Bra018428.1-P	Field mustard	nucleus	38.86	26.33
Bra017511.1-P	Field mustard	nucleus	31.88	24.17
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	23.14	23.98
Bra034672.1-P	Field mustard	cytosol	26.2	23.9
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	23.58	22.98
Bra035092.1-P	Field mustard	nucleus	26.64	19.3
Bra022093.1-P	Field mustard	nucleus	17.9	18.64
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	22.71	18.44
Bra001477.1-P	Field mustard	nucleus	26.64	17.94
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	21.83	17.92
Bra013423.1-P	Field mustard	nucleus	23.14	17.91
Bra012650.1-P	Field mustard	nucleus	27.07	17.77
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	22.71	17.57
Bra039354.1-P	Field mustard	cytosol	24.89	17.54
Bra034718.1-P	Field mustard	nucleus	25.76	17.51
Bra012532.1-P	Field mustard	nucleus	23.14	17.32

Protein Annotations

EnsemblPlants:Bra040255.1	EnsemblPlants:Bra040255.1-P	EnsemblPlantsGene:Bra040255	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	UniParc:UPI000253EC0A	UniProt:M4FGM7	MapMan:35.1

Description

AT1G45976 (E=1e-106) SBP1 | SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding

Coordinates

chrScaffold000193:-:8937..9756

Molecular Weight (calculated)

26025.1 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.455

Length

229 amino acids

Sequence
(BLAST)

001: MDFLENSSQL SSIDFWQGRS VSTGLGLSLD SAPIGSSDGS ALLSLVRDDV ERELQRQDAE IDRFLKIQGD QLRHAVLDQI QRSQYKTLAL MEERVVQKLR
101: EKDEELEMIN RTNKELEVRI EQLAMEAEAW QQRAKYNENM IAALNYNLER AQGRPRGSIE GCGDSEVDDT ASCFNGRNSK MMCRFCGVGE VCMLLLPCKH
201: MCLCKECERN LSSCPLCQSS KFLGMEVYM

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.