Factsheet for Bra017511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43447	Canola	nucleus	99.01	99.01
Bra024967.1-P	Field mustard	plastid	65.89	80.57
AT5G47050.1	Thale cress	nucleus	75.17	75.67
Bra022093.1-P	Field mustard	nucleus	51.99	71.36
Bra012650.1-P	Field mustard	nucleus	54.97	47.56
KRH77271	Soybean	plastid	47.02	44.1
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	48.34	43.32
KRH28216	Soybean	nucleus	47.02	43.16
Solyc06g061020.2.1	Tomato	nucleus	47.02	42.9
Solyc08g077460.2.1	Tomato	nucleus	48.01	41.67
PGSC0003DMT400004642	Potato	nucleus	47.68	41.62
Solyc08g007120.2.1	Tomato	nucleus	45.36	41.39
PGSC0003DMT400068387	Potato	nucleus	46.69	41.23
KRH04275	Soybean	nucleus	47.68	40.34
KRH57556	Soybean	nucleus	45.7	39.43
PGSC0003DMT400052841	Potato	nucleus	45.03	38.97
GSMUA_Achr1P00560_001	Banana	nucleus	34.11	35.64
GSMUA_Achr2P12040_001	Banana	plastid	31.13	34.94
GSMUA_Achr4P30100_001	Banana	plastid	34.77	34.43
Os02t0687500-01	Rice	cytosol, nucleus, plastid	36.09	34.28
GSMUA_Achr2P18250_001	Banana	nucleus	37.09	33.94
GSMUA_Achr8P14860_001	Banana	nucleus	37.09	33.23
TraesCS6D01G243000.1	Wheat	cytosol	35.76	32.34
TraesCS6B01G289500.1	Wheat	nucleus	35.76	31.95
Bra040255.1-P	Field mustard	nucleus	24.17	31.88
GSMUA_Achr4P21690_001	Banana	nucleus	33.77	31.48
Os10t0565500-01	Rice	nucleus	36.42	31.34
TraesCS6A01G262200.1	Wheat	nucleus	35.1	31.18
HORVU6Hr1G066640.4	Barley	nucleus	35.1	30.9
Zm00001d047069_P001	Maize	cytosol	33.77	30.72
TraesCS1D01G217800.1	Wheat	cytosol	32.45	30.53
TraesCS1B01G228800.1	Wheat	cytosol	32.45	30.06
TraesCS1A01G215300.1	Wheat	cytosol	32.12	29.94
Zm00001d017649_P001	Maize	plastid	32.78	29.91
EES05709	Sorghum	nucleus	34.77	29.75
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	34.11	29.6
Zm00001d051484_P001	Maize	nucleus, plastid	34.44	29.46
HORVU1Hr1G054930.3	Barley	cytosol	31.46	28.96
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	31.79	28.57
Bra019910.1-P	Field mustard	nucleus, plastid	28.15	27.96
Bra018428.1-P	Field mustard	nucleus	29.47	26.33
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	19.21	26.24
Bra031495.1-P	Field mustard	nucleus	28.15	25.99
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	19.54	25.11
Bra034672.1-P	Field mustard	cytosol	20.53	24.7
Bra013423.1-P	Field mustard	nucleus	23.84	24.32
Bra012532.1-P	Field mustard	nucleus	23.84	23.53
Bra014051.1-P	Field mustard	nucleus	23.84	23.15
Bra035092.1-P	Field mustard	nucleus	24.17	23.1
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	22.19	22.64
Bra039354.1-P	Field mustard	cytosol	23.51	21.85
Bra034718.1-P	Field mustard	nucleus	23.51	21.07
Bra001477.1-P	Field mustard	nucleus	22.85	20.29
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	18.21	19.71
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	17.22	18.44

Protein Annotations

EnsemblPlants:Bra017511.1	EnsemblPlants:Bra017511.1-P	EnsemblPlantsGene:Bra017511	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF13
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000254243E	UniProt:M4DLY0
MapMan:35.1	:	:	:	:	:

Description

AT5G47050 (E=5e-105) | protein binding / zinc ion binding

Coordinates

chrA09:-:15894517..15895698

Molecular Weight (calculated)

33674.9 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.591

Length

302 amino acids

Sequence
(BLAST)

001: MALQAHHHPS TMFFLNRNGQ EGTDFSPDLQ KSQLPSITAG VDKRKRARED YSVIDLETTA APMNPPPCTP PQFISRRQTP NVVSTGLRLS QGQSQSMEQR
101: SSSSPMIDGN FAGEINRQAD ELDRFLQTQG EQLRCMLADS RERHYRELLR TREESVRRRL GEKEAEIEKA TRRHAELEAR AAQIEKEARA WQVRAAAKEA
201: EAMSLQARLQ QVVAHGGGVT AAEPKLKSVD GVDEAGDAES VYVDPDRFEL NGPSCRICRR RAATVLALPC RHLVLCKGCD GSVRVCPLCL SLKNSSVEVF
301: FF

Best Arabidopsis Sequence Match ( AT5G47050.1 )
(BLAST)

001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.