Factsheet for Bra011582.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52651	Canola	cytosol	96.38	96.38
CDX69109	Canola	nucleus	84.62	91.22
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	72.4	68.09
Bra034672.1-P	Field mustard	cytosol	75.11	66.14
AT4G35070.1	Thale cress	cytosol	70.14	58.49
VIT_03s0038g02450.t01	Wine grape	nucleus	40.27	41.2
Solyc01g111610.2.1	Tomato	cytosol	38.46	34.98
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	41.63	34.85
PGSC0003DMT400015829	Potato	nucleus	38.91	34.13
Solyc10g055560.1.1	Tomato	nucleus	41.63	34.07
KRH51394	Soybean	nucleus	38.46	29.62
KRH60696	Soybean	nucleus, plastid	38.46	29.11
KRH24321	Soybean	cytosol	36.65	28.12
KRG94235	Soybean	cytosol	31.22	27.82
KRH29000	Soybean	cytosol	35.75	27.53
Bra040255.1-P	Field mustard	nucleus	23.98	23.14
Bra024967.1-P	Field mustard	plastid	24.43	21.86
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	26.7	19.93
Bra017511.1-P	Field mustard	nucleus	26.24	19.21
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	23.98	18.79
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	23.53	18.64
Bra039354.1-P	Field mustard	cytosol	27.15	18.46
Bra035092.1-P	Field mustard	nucleus	26.24	18.35
Bra012532.1-P	Field mustard	nucleus	25.34	18.3
Bra013423.1-P	Field mustard	nucleus	24.43	18.24
Bra034718.1-P	Field mustard	nucleus	27.15	17.8
Bra014051.1-P	Field mustard	nucleus	23.98	17.04
Bra001477.1-P	Field mustard	nucleus	24.89	16.18
Bra012650.1-P	Field mustard	nucleus	24.89	15.76
Bra022093.1-P	Field mustard	nucleus	15.38	15.45
Bra019910.1-P	Field mustard	nucleus, plastid	19.46	14.14
Bra018428.1-P	Field mustard	nucleus	21.27	13.91
Bra031495.1-P	Field mustard	nucleus	19.46	13.15

Protein Annotations

EnsemblPlants:Bra011582.1	EnsemblPlants:Bra011582.1-P	EnsemblPlantsGene:Bra011582	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PFAM:PF13920	PIRSF:PIRSF036836
SEG:seg	UniParc:UPI0002547143	UniProt:M4D525	MapMan:35.1	:	:

Description

AT4G35070 (E=1e-042) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding (TAIR:AT1G45976.1); Has 495 Blast hits to 488 proteins in 78 species: Archae - 0; Bacteria - 9; Metazoa - 169; Fungi - 4; Plants - 212; Viruses - 13; Other Eukaryotes - 88 (source: NCBI BLink).

Coordinates

chrA01:-:1564613..1565353

Molecular Weight (calculated)

25280.3 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.560

Length

221 amino acids

Sequence
(BLAST)

001: MAIQTQLNYN ASNVINQIVM DELYMNNNNQ QHALFNQQSF LDALMEKQRQ EIDQFIRTQS ERLRYALREQ RRQETETLLR QMEAKALVLM TRKEEEMSRA
101: LSKNMELEDL LRRMEAENQT WQRMARESEA TVATLSSTLE QVKERAVTCC KDEGSCCGGG DDSVPGKRMS GSCLNCGSDG ETRVLFLPCR HLCCCTECEA
201: GLVVCPICST PKKNRIEAIT F

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.