Factsheet for Solyc10g055560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	89.26	91.29
Solyc01g111610.2.1	Tomato	cytosol	56.67	62.96
VIT_03s0038g02450.t01	Wine grape	nucleus	41.85	52.31
CDY40647	Canola	cytosol	37.78	43.4
AT4G35070.1	Thale cress	cytosol	42.59	43.4
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	37.41	42.98
CDX69109	Canola	nucleus	31.85	41.95
CDX72513	Canola	cytosol	36.3	41.88
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	34.07	41.63
CDY52651	Canola	cytosol	33.7	41.18
CDX73168	Canola	cytosol	38.15	41.04
Bra034672.1-P	Field mustard	cytosol	38.15	41.04
CDY15019	Canola	cytosol	38.15	41.04
CDX76311	Canola	cytosol	37.78	40.32
CDY17506	Canola	cytosol, nucleus, plastid	37.78	40.32
KRH51394	Soybean	nucleus	39.63	37.28
KRH60696	Soybean	nucleus, plastid	40.0	36.99
KRH24321	Soybean	cytosol	36.3	34.03
KRH29000	Soybean	cytosol	34.81	32.75
KRG94235	Soybean	cytosol	27.41	29.84
Solyc08g007120.2.1	Tomato	nucleus	27.04	22.05
Solyc06g061020.2.1	Tomato	nucleus	24.44	19.94
Solyc08g077460.2.1	Tomato	nucleus	25.19	19.54
Solyc02g031710.2.1	Tomato	nucleus	22.22	19.35
Solyc02g069180.2.1	Tomato	plastid	17.78	16.96
Solyc05g005210.2.1	Tomato	nucleus	20.74	16.77
Solyc04g078760.2.1	Tomato	nucleus	20.0	15.98
Solyc03g112860.2.1	Tomato	nucleus, plastid	14.07	11.76

Protein Annotations

EnsemblPlants:Solyc10g055560.1.1	EnsemblPlantsGene:Solyc10g055560.1	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PFscan:PS50089
PIRSF:PIRSF036836	SEG:seg	UniParc:UPI00027695E3	UniProt:K4D1E6	MapMan:35.1	:

Description

No Description!

Coordinates

chr10:+:56964603..56965500

Molecular Weight (calculated)

31278.2 Da

IEP (calculated)

6.493

GRAVY (calculated)

-0.641

Length

270 amino acids

Sequence
(BLAST)

001: MAIQAHLYSE NLGFSLGSLH DLMDDNACGF NQYFVNSHPE QQQQQQQQPY LLQIQQQQFQ ILNQKNKIQN SNSSNSTVFH HNLASQFDKQ RVEIDQFVSL
101: QNERLRLALQ EQRKQQLALI LRNYESKTHL LLKQKDEELV KACNRSKELE DFLKRIEMEN QTWQRIANEN EAVVVSLNNT IEQLRENACF QSTNVGDAES
201: CCDVQPIEDK VQSSQQEQTI KMMCKRCNSS KSCMVFLPCR HLSSCKDCET CLHSCPLCNM VKKATIEALI

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.