Factsheet for Solyc04g078760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020551	Potato	nucleus	99.41	89.84
KRH05668	Soybean	nucleus	70.12	69.3
VIT_18s0001g10370.t01	Wine grape	nucleus	65.68	67.68
KRH15376	Soybean	nucleus, plastid	70.12	67.52
Bra040255.1-P	Field mustard	nucleus	44.38	65.5
AT1G45976.1	Thale cress	cytosol	59.76	62.15
CDY06767	Canola	cytosol	55.62	61.84
CDY17048	Canola	cytosol	56.51	61.41
CDY17103	Canola	cytosol	53.55	61.15
CDY40841	Canola	cytosol	53.85	60.87
Bra014051.1-P	Field mustard	nucleus	55.92	60.77
GSMUA_Achr10P...	Banana	nucleus	51.78	55.03
GSMUA_Achr6P10180_001	Banana	plastid	54.14	52.74
Os03t0263800-01	Rice	nucleus, plastid	52.37	51.75
EER95135	Sorghum	plastid	51.48	51.63
Zm00001d047856_P001	Maize	nucleus, plastid	50.0	51.37
Zm00001d028532_P001	Maize	nucleus, plastid	51.18	51.34
TraesCS4B01G215100.1	Wheat	plastid	50.89	50.74
TraesCS4D01G215600.1	Wheat	plastid	50.89	50.74
TraesCS4A01G089200.1	Wheat	plastid	50.59	50.44
GSMUA_Achr11P...	Banana	nucleus	54.73	49.47
HORVU4Hr1G061210.1	Barley	cytosol	50.89	41.65
Solyc05g005210.2.1	Tomato	nucleus	31.95	32.34
Solyc03g112860.2.1	Tomato	nucleus, plastid	24.26	25.39
Solyc08g007120.2.1	Tomato	nucleus	23.96	24.47
Solyc02g031710.2.1	Tomato	nucleus	21.01	22.9
Solyc08g077460.2.1	Tomato	nucleus	23.08	22.41
Solyc01g111610.2.1	Tomato	cytosol	15.98	22.22
Solyc06g061020.2.1	Tomato	nucleus	21.3	21.75
Solyc10g055560.1.1	Tomato	nucleus	15.98	20.0
Solyc02g069180.2.1	Tomato	plastid	15.98	19.08

Protein Annotations

EMBL:AY490246	EnsemblPlants:Solyc04g078760.2.1	EnsemblPlantsGene:Solyc04g078760.2	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0000663823	UniProt:Q2VY15
MapMan:35.2	:	:	:	:	:

Description

CONSTANS interacting protein 4 [Source:UniProtKB/TrEMBL;Acc:Q2VY15]

Coordinates

chr4:+:63418682..63421186

Molecular Weight (calculated)

38618.0 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.661

Length

338 amino acids

Sequence
(BLAST)

001: MALPHHHLQL HIQQQPHQQQ QQSKSYRDLY NNMDGQITNP VVYFNGSNLP EQSQHPPYIP PFQVVGLAPG TADDGGLDLQ WNYGLEPKKK RPKEQDFMEN
101: NNSQISSVDL LQRRSVSTGL GLSLDNGRLA SSCDSAFLGL VGDDIERELQ RQDAEIDRYI KVQGDRLRQA VLEKVQANQI QAITYVEEKV LQKLRERDTE
201: VDDINKKNME LELRMEQLAL EANAWQQRAK YNENLINTLK VNLQHVYAQS RDSKEGCGDS EVDDTASCCN GRATDLHLLC RDSKEMKELM TCRVCRTNEV
301: CMLLLPCKHL CLCKECESKL SLCPLCQSTK YIGMEVYM

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.