Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 3
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 76.66 | 83.65 |
| Os03t0263800-01 | Rice | nucleus, plastid | 63.69 | 64.62 |
| TraesCS4D01G215600.1 | Wheat | plastid | 63.11 | 64.6 |
| TraesCS4B01G215100.1 | Wheat | plastid | 63.11 | 64.6 |
| GSMUA_Achr11P... | Banana | nucleus | 69.45 | 64.44 |
| TraesCS4A01G089200.1 | Wheat | plastid | 62.82 | 64.31 |
| EER95135 | Sorghum | plastid | 62.25 | 64.09 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 60.52 | 63.83 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 61.1 | 62.91 |
| Bra040255.1-P | Field mustard | nucleus | 37.18 | 56.33 |
| KRH05668 | Soybean | nucleus | 55.33 | 56.14 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 51.3 | 54.27 |
| Solyc04g078760.2.1 | Tomato | nucleus | 52.74 | 54.14 |
| KRH15376 | Soybean | nucleus, plastid | 53.89 | 53.28 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 62.54 | 52.54 |
| AT1G45976.1 | Thale cress | cytosol | 48.13 | 51.38 |
| CDY17103 | Canola | cytosol | 43.23 | 50.68 |
| CDY40841 | Canola | cytosol | 43.52 | 50.5 |
| CDY06767 | Canola | cytosol | 44.09 | 50.33 |
| PGSC0003DMT400020551 | Potato | nucleus | 52.45 | 48.66 |
| CDY17048 | Canola | cytosol | 43.52 | 48.55 |
| Bra014051.1-P | Field mustard | nucleus | 43.23 | 48.23 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 17.29 | 31.91 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 19.31 | 29.13 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 20.17 | 28.34 |
| GSMUA_Achr10P... | Banana | nucleus | 25.65 | 27.99 |
| GSMUA_Achr11P... | Banana | nucleus | 25.65 | 27.9 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 23.05 | 27.87 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 23.05 | 27.78 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 23.34 | 26.64 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 17.87 | 25.41 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 23.92 | 24.63 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 20.17 | 24.48 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 16.14 | 23.24 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 17.58 | 22.68 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 21.04 | 22.53 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 20.75 | 21.82 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 19.02 | 21.64 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 19.31 | 20.87 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 20.75 | 20.81 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 17.87 | 20.81 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 17.29 | 20.76 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 19.02 | 19.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P10180_001 | EnsemblPlants:GSMUA_Achr6T10180_001 | EnsemblPlantsGene:GSMUA_Achr6G10180_001 | Gene3D:1.10.1170.10 | Gene3D:1.10.533.10 | Gene3D:1.10.8.10 |
| InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:Znf_RING | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI000294BACA | UniProt:M0T5R7 |
| MapMan:35.1 | : | : | : | : | : |
Description
S-RNase-binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G10180_001]
Coordinates
chr6:-:6800845..6805847
Molecular Weight (calculated)
39098.1 Da
IEP (calculated)
5.736
GRAVY (calculated)
-0.432
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFFSQHHHH LQQPQQQQQA VPLRFPLLSL PFLSSSQVAK IPICLMNQQK CRNFVPIDGQ ISAPIDFTPA AYPDPSHPAC AAPAAAADGG SSGWEPRRKR
101: LKEQDLLENS QISSIDFLQT GSVSTGLGLS LDDRRVAASS GESPLLLLPT VDKDIDREVQ RMDAEMDQFI KLEGERMRKS ILEKVQMKQF QTLATVEEKI
201: LRKIREKESE VEGINKKNLE LEEQMKQVAM EVNVWQQRAK YNESMINSLK CNLEQLYAQS KDNKEGCGDS EVDDTASCCN GNTDLQLMCK QNKDVESMAC
301: KVCRVNEVCM LLLPCRHLCL CKECESKFSF CPLCNSSKFI GMEIYLP
101: LKEQDLLENS QISSIDFLQT GSVSTGLGLS LDDRRVAASS GESPLLLLPT VDKDIDREVQ RMDAEMDQFI KLEGERMRKS ILEKVQMKQF QTLATVEEKI
201: LRKIREKESE VEGINKKNLE LEEQMKQVAM EVNVWQQRAK YNESMINSLK CNLEQLYAQS KDNKEGCGDS EVDDTASCCN GNTDLQLMCK QNKDVESMAC
301: KVCRVNEVCM LLLPCRHLCL CKECESKFSF CPLCNSSKFI GMEIYLP
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Arabidopsis Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.