Factsheet for Solyc01g111610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015829	Potato	nucleus	89.71	86.51
Solyc10g055560.1.1	Tomato	nucleus	62.96	56.67
VIT_03s0038g02450.t01	Wine grape	nucleus	41.15	46.3
CDY40647	Canola	cytosol	39.51	40.85
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	39.09	40.43
CDX72513	Canola	cytosol	38.68	40.17
AT4G35070.1	Thale cress	cytosol	42.39	38.87
CDX69109	Canola	nucleus	32.51	38.54
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	34.98	38.46
CDY52651	Canola	cytosol	34.57	38.01
CDY15019	Canola	cytosol	39.09	37.85
CDX73168	Canola	cytosol	39.09	37.85
Bra034672.1-P	Field mustard	cytosol	38.68	37.45
CDX76311	Canola	cytosol	38.68	37.15
CDY17506	Canola	cytosol, nucleus, plastid	38.68	37.15
KRH51394	Soybean	nucleus	43.21	36.59
KRH24321	Soybean	cytosol	43.21	36.46
KRH60696	Soybean	nucleus, plastid	43.21	35.96
KRH29000	Soybean	cytosol	41.56	35.19
KRG94235	Soybean	cytosol	33.33	32.66
Solyc08g007120.2.1	Tomato	nucleus	30.04	22.05
Solyc02g031710.2.1	Tomato	nucleus	25.93	20.32
Solyc06g061020.2.1	Tomato	nucleus	26.34	19.34
Solyc08g077460.2.1	Tomato	nucleus	27.57	19.25
Solyc02g069180.2.1	Tomato	plastid	20.99	18.02
Solyc05g005210.2.1	Tomato	nucleus	22.63	16.47
Solyc04g078760.2.1	Tomato	nucleus	22.22	15.98
Solyc03g112860.2.1	Tomato	nucleus, plastid	16.46	12.38

Protein Annotations

EnsemblPlants:Solyc01g111610.2.1	EnsemblPlantsGene:Solyc01g111610.2	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD
ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002767710
UniProt:K4B423	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:97833068..97833986

Molecular Weight (calculated)

28270.8 Da

IEP (calculated)

5.209

GRAVY (calculated)

-0.615

Length

243 amino acids

Sequence
(BLAST)

001: MAIQAQLYTD NLGFSLGSSM ENACGFNQFC FATQQQQQQQ SFNQKFMNQN LMNNNMTESM PFSQFLITQM EKQRIEIDHF INSQNEKLRW ILNEQKKQQL
101: GLIWRKYESR LEFLLKHKDE EIVKAGSRTK ELEEYLKKME MENEAWQRIA NENEAIVMSL NNTIEQLRES GYCLSTNGED AESCCDVHDE DEQKMICKSC
201: NSRSSCMICL PCRHLSSCKT CDSLLRQCPV CGIPKKAAIE AMF

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.