CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER92590
EER95307
EER99115
EES02107
EES03996
EES05136
EES06399
EES06432
EES07255
EES07768
EES09292
EES10652
EES13033
EES18250
KXG21417
KXG23810
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	EES03996	AT1G22840.1	21798944
AT4G17680.1	EES18250	AT1G22840.1	21798944
AT4G17680.1	EER95307	AT1G49850.1	21798944
AT4G17680.1	KXG23810	AT1G49850.1	21798944
AT4G17680.1	EES06432	AT1G67170.1	21798944
AT4G17680.1	EES02107	AT1G76760.1	21798944
AT4G17680.1	EER92590	AT2G32840.1	21798944
AT4G17680.1	KXG21417	AT3G10970.1	21798944
AT4G17680.1	EER99115	AT3G12930.1	21798944
AT4G17680.1	EER88112	AT3G47620.1	21798944
AT4G17680.1	EES07255	AT3G47620.1	21798944
AT4G17680.1	EES13033	AT3G51180.1	21798944
AT4G17680.1	EES07768	AT3G54826.1	21798944
AT4G17680.1	KXG32187	AT4G02150.1	21798944
AT4G17680.1	EES06399	AT4G32190.1	21798944
AT4G17680.1	EES05136	AT5G14070.1	21798944
AT4G17680.1	EES10652	AT5G14070.1	21798944
AT4G17680.1	EES09292	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	87.36	90.48
Zm00001d047069_P001	Maize	cytosol	83.05	87.05
Os10t0565500-01	Rice	nucleus	68.97	68.38
HORVU1Hr1G054930.3	Barley	cytosol	58.33	61.89
TraesCS1A01G215300.1	Wheat	cytosol	57.18	61.42
TraesCS1D01G217800.1	Wheat	cytosol	56.32	61.06
TraesCS1B01G228800.1	Wheat	cytosol	57.18	61.04
GSMUA_Achr2P12040_001	Banana	plastid	35.06	45.35
GSMUA_Achr1P00560_001	Banana	nucleus	37.64	45.33
GSMUA_Achr4P30100_001	Banana	plastid	38.51	43.93
GSMUA_Achr4P21690_001	Banana	nucleus	40.52	43.52
GSMUA_Achr2P18250_001	Banana	nucleus	40.52	42.73
KRH77271	Soybean	plastid	39.37	42.55
KRH28216	Soybean	nucleus	39.37	41.64
GSMUA_Achr8P14860_001	Banana	nucleus	40.23	41.54
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	38.22	39.47
EES05709	Sorghum	nucleus	39.94	39.38
Solyc06g061020.2.1	Tomato	nucleus	37.36	39.27
Solyc08g077460.2.1	Tomato	nucleus	38.79	38.79
PGSC0003DMT400004642	Potato	nucleus	37.93	38.15
KRH57556	Soybean	nucleus	38.22	38.0
KRH04275	Soybean	nucleus	38.22	37.25
Solyc08g007120.2.1	Tomato	nucleus	35.34	37.16
PGSC0003DMT400068387	Potato	nucleus	36.49	37.13
Bra024967.1-P	Field mustard	plastid	25.86	36.44
CDY09609	Canola	cytosol	25.29	35.63
CDX77733	Canola	nucleus	29.89	34.67
AT1G32740.1	Thale cress	nucleus	31.03	34.62
AT5G47050.1	Thale cress	nucleus	29.6	34.33
CDY33511	Canola	nucleus	29.89	34.32
CDY43447	Canola	nucleus	29.6	34.11
Bra017511.1-P	Field mustard	nucleus	29.6	34.11
PGSC0003DMT400052841	Potato	nucleus	33.91	33.81
CDX90458	Canola	cytosol	29.02	33.22
AT4G17680.1	Thale cress	nucleus	29.89	33.12
CDY37172	Canola	cytosol	28.74	33.11
CDY51856	Canola	cytosol	28.45	32.67
CDY03162	Canola	cytosol	29.6	31.99
EES12084	Sorghum	cytosol, nucleus, plastid	23.56	27.99
Bra012650.1-P	Field mustard	nucleus	27.87	27.79
OQU81469	Sorghum	cytosol	26.72	27.6
Bra022093.1-P	Field mustard	nucleus	17.24	27.27
EES10713	Sorghum	cytosol	26.15	26.15
EES05161	Sorghum	plastid	24.71	25.37
EER91098	Sorghum	nucleus	25.57	25.07
OQU83596	Sorghum	cytosol, extracellular	21.84	24.6
OQU85032	Sorghum	cytosol	26.15	24.4
OQU81471	Sorghum	mitochondrion	26.44	24.34
OQU83597	Sorghum	cytosol	23.56	24.19
EER95135	Sorghum	plastid	20.98	21.66
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.55	20.55

Protein Annotations

EnsemblPlants:KXG38894	EnsemblPlantsGene:SORBI_3001G293600	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF5	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:KXG38894	ProteinID:KXG38894.1	SEG:seg	UniParc:UPI00081ACEF1
UniProt:A0A1B6QLW2	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:57127186..57128876

Molecular Weight (calculated)

37424.0 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.451

Length

348 amino acids

Sequence
(BLAST)

001: MAVQAHYHHH HHHHHRESPF LVSGGGTPES SRLVAAMELH QAQKEAMAPQ QAPPLFLDFS HGDCGGGRKR QREAESVSPQ FFSLQQQPEA QAPKLINLAQ
101: LHKRPAMGLR LDFDEGSEHV SCTSSASASC LLSEELAAQR DQHKNEMDRL IQEHAERLRR ALADTRRRHY RSLVGAAEAA AAQRIREKEA EALEAARRGA
201: DLEDRVARLR AEAEAWQAKA LADQSTAAAL HAQLQQASAA AQARGKAAEE EEDNAGGAAA DDAGSCFVDP DRVVEIAPPR PPPARPCRTC RQRSASVVLL
301: PCRHLCVCAE CEPAVPAAAP FAAGAGAVAA ACPMCRGAVT GTVQVFFS

Best Arabidopsis Sequence Match ( AT4G17680.1 )
(BLAST)

001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.