CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	62.46	65.2
OQU83597	Sorghum	cytosol	57.61	52.51
Os11t0542100-01	Rice	cytosol	50.49	47.71
EES12084	Sorghum	cytosol, nucleus, plastid	35.92	37.88
EES10713	Sorghum	cytosol	40.78	36.21
OQU81469	Sorghum	cytosol	39.16	35.91
OQU81471	Sorghum	mitochondrion	41.75	34.13
GSMUA_Achr10P...	Banana	nucleus	34.95	33.96
OQU85032	Sorghum	cytosol	39.81	32.98
EES05161	Sorghum	plastid	35.92	32.74
GSMUA_Achr6P16260_001	Banana	nucleus	32.69	29.97
GSMUA_Achr6P08300_001	Banana	plastid	31.39	28.03
Os02t0246101-00	Rice	cytosol	13.59	24.28
EES05709	Sorghum	nucleus	25.24	22.1
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	24.6	21.84
EER91098	Sorghum	nucleus	24.92	21.69
EER95135	Sorghum	plastid	20.71	18.99
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.68	18.36

Protein Annotations

EnsemblPlants:OQU83596	EnsemblPlantsGene:SORBI_3005G142101	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PFAM:PF13920	PFscan:PS50089
ProteinID:OQU83596	ProteinID:OQU83596.1	SEG:seg	UniParc:UPI000B8BAA5A	UniProt:A0A1Z5RJR4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr5:-:60411499..60412428

Molecular Weight (calculated)

32410.1 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.181

Length

309 amino acids

Sequence
(BLAST)

001: MLALKDYGAL LSAAAATPGV AGGYAWQHYD YCAAQSELTC NGGGGAALSV PVPSRKRGRE EDEGDDLLHY APFLPLPVTR RPHSATPPAA AAASTSGREE
101: EMSAEHALWR RLQHGAEVDA LVRAECDRLR AGLELARRRQ RQALVRAAAV SVSAMAGRVR DAEAQLEAAR RRAAELEEGV RLAAAEAQAW RGVARGNEAV
201: AAGLQATLDA LLLRSSSAEG FGDSDPDDAQ SCCCFYVEEA PDTAAAATAS SSSTWSGKWA CKACGVGEAS VLLLPCRHLC LCKACERRTD ACPVCSGDKN
301: AAIHIAPPI

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.