CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05161	Sorghum	plastid	52.55	57.82
OQU81469	Sorghum	cytosol	45.04	49.85
EES12084	Sorghum	cytosol, nucleus, plastid	38.61	49.15
EES10713	Sorghum	cytosol	45.31	48.56
OQU81471	Sorghum	mitochondrion	41.02	40.48
OQU83596	Sorghum	cytosol, extracellular	32.98	39.81
OQU83597	Sorghum	cytosol	34.85	38.35
GSMUA_Achr10P...	Banana	nucleus	30.29	35.53
GSMUA_Achr6P16260_001	Banana	nucleus	29.76	32.94
GSMUA_Achr6P08300_001	Banana	plastid	27.08	29.19
EER91098	Sorghum	nucleus	25.74	27.04
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	24.4	26.15
EES05709	Sorghum	nucleus	22.25	23.51
EER95135	Sorghum	plastid	18.77	20.77
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	19.03	19.45

Protein Annotations

EnsemblPlants:OQU85032	EnsemblPlantsGene:SORBI_3004G161400	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR42647	PANTHER:PTHR42647:SF3	ProteinID:KXG30313.1	ProteinID:OQU85030.1	ProteinID:OQU85031.1	ProteinID:OQU85032
ProteinID:OQU85032.1	ProteinID:OQU85033.1	SEG:seg	UniParc:UPI0007F30309	UniProt:A0A194YQ02	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:+:50973753..50976351

Molecular Weight (calculated)

38783.6 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.204

Length

373 amino acids

Sequence
(BLAST)

001: MAVAHAFHHD SRAIRPALEN ATTTASAVLG DHDTAAGGCG HLLLLPGVVQ RQAAAVAGHT AFSDPRSELT CNNNNKYDAT WSVVVPRKRA RIGGAVDAAG
101: LVMEGHRHRA LLPVPQAFAP GGGGEGALGG GSSSSSRVLC SGAASTSGRP STAAPVSQSQ HGILAHLYRH SVEVDALVRI ENERLRAGLE EARRRHVRAV
201: VSAVERGAAR RLRAAEADLA RALARNAELG ERVREMGAEG QAWQGIASGH EAAAAGLRAT LEQLLLQQAP CAGAADEEGQ GEGEAVVEDA RSCCFEPERE
301: RRHEGGPDDD DDDKQARGSG CTRAACRACG AADACVLLLP CRHLCLCGWC EAVVEACPVC AATKNASLHV LLS

Best Arabidopsis Sequence Match ( AT1G10650.2 )
(BLAST)

001: MIRPNKRGRE AESISNNIQR QQQKLQMSLN YNYNNTSVRE EVPKENLVST GLRLSYDDDE HNSSVTSASG SILAASPIFQ SLDDSLRIDL HRQKDEFDQF
101: IKIQAAQMAK GVRDMKQRHI ASFLTTLEKG VSKKLQEKDH EINDMNKKNK ELVERIKQVA MEAQNWHYRA KYNESVVNVL KANLQQAMSH NNSVIAAADQ
201: GKEGFGDSEI DDAASSYIDP NNNNNNNMGI HQRMRCKMCN VKEVSVLIVP CRHLSLCKEC DVFTKICPVC KSLKSSCVQV FFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.