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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • extracellular 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU83596 Sorghum cytosol, extracellular 65.2 62.46
Zm00001d052639_P001 Maize extracellular 58.45 51.18
Zm00001d010503_P001 Maize cytosol, mitochondrion 19.59 44.96
Os11t0542100-01 Rice cytosol 47.97 43.43
Zm00001d004743_P001 Maize plastid 22.3 40.0
Zm00001d026161_P001 Maize cytosol 18.58 39.01
Zm00001d025319_P001 Maize cytosol 40.2 38.51
Zm00001d003850_P001 Maize extracellular 41.55 36.83
Zm00001d025310_P001 Maize cytosol 39.19 36.14
Zm00001d003852_P001 Maize cytosol, nucleus, plastid 40.2 36.06
Zm00001d016648_P001 Maize cytosol 37.16 35.48
GSMUA_Achr10P... Banana nucleus 37.16 34.59
GSMUA_Achr6P16260_001 Banana nucleus 36.49 32.05
GSMUA_Achr6P08300_001 Banana plastid 32.77 28.03
Os02t0246101-00 Rice cytosol 14.53 24.86
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 26.01 23.33
Zm00001d047069_P001 Maize cytosol 26.01 23.19
Zm00001d029988_P001 Maize cytosol, mitochondrion, nucleus 25.68 22.62
Zm00001d051484_P001 Maize nucleus, plastid 25.68 21.53
Zm00001d017649_P001 Maize plastid 23.65 21.15
Zm00001d033419_P001 Maize plastid 18.24 19.29
Zm00001d015130_P001 Maize cytosol, nucleus, plastid 22.97 19.1
Zm00001d047856_P001 Maize nucleus, plastid 20.95 18.84
Zm00001d028532_P001 Maize nucleus, plastid 20.95 18.4
Zm00001d003613_P002 Maize nucleus 25.0 17.05
Protein Annotations
EnsemblPlants:Zm00001d052640_P001EnsemblPlants:Zm00001d052640_T001EnsemblPlantsGene:Zm00001d052640Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF6PFAM:PF13920
PFscan:PS50089ProteinID:AQK57565.1SEG:segUniParc:UPI0002207EF4UniProt:K7V2L1MapMan:35.2
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr4:+:195562366..195563256
Molecular Weight (calculated)
31063.8 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.200
Length
296 amino acids
Sequence
(BLAST)
001: MAVQAQFGGL LLPPYAVEDQ MRALKDYGVL LSAAQSELTR NVVVGGGGAA AMPLPSRKRH RREDEHRHYN VDVPLPGMGS LAADPTAAAS TSGRAPADAE
101: VDALVRAECE QLRAGLEAAR ARQRRALLAR AAASVLARRA REAEARLEAA RRRAAELDEW VRLAAAEAQA WCGVARANEA VAAGMRATLD ALLLRSSAAA
201: AGREGEGDSS EPGPEDAQSR CSCCYVEDVE ATGTAAATPS PLWNGRWACR ACGEGEASVL LLPCRHMCLC KACEPRTDAC PVCSGAKNAS IHIAPS
Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.