Factsheet for Zm00001d016648_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05161	Sorghum	plastid	73.87	67.55
Zm00001d010503_P001	Maize	cytosol, mitochondrion	21.29	51.16
Zm00001d025319_P001	Maize	cytosol	49.35	49.51
Zm00001d003850_P001	Maize	extracellular	53.23	49.4
Zm00001d004743_P001	Maize	plastid	25.81	48.48
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	48.71	45.76
Zm00001d025310_P001	Maize	cytosol	46.13	44.55
Zm00001d026161_P001	Maize	cytosol	19.68	43.26
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	35.48	37.16
Zm00001d052639_P001	Maize	extracellular	35.81	32.84
GSMUA_Achr10P...	Banana	nucleus	30.97	30.19
GSMUA_Achr6P16260_001	Banana	nucleus	31.94	29.38
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	27.74	26.06
Zm00001d047069_P001	Maize	cytosol	27.1	25.3
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	27.1	25.0
GSMUA_Achr6P08300_001	Banana	plastid	27.42	24.57
Zm00001d051484_P001	Maize	nucleus, plastid	27.42	24.08
Zm00001d017649_P001	Maize	plastid	24.84	23.26
Zm00001d003613_P002	Maize	nucleus	30.0	21.43
Zm00001d033419_P001	Maize	plastid	18.06	20.0
Zm00001d047856_P001	Maize	nucleus, plastid	20.32	19.15
Zm00001d028532_P001	Maize	nucleus, plastid	20.65	18.99
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	20.65	17.98

Protein Annotations

EntrezGene:100217023	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:AQK71366.1	UniProt:B4FL02	EMBL:BT037790
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF3	UniParc:UPI00017B6A50	EnsemblPlantsGene:Zm00001d016648
EnsemblPlants:Zm00001d016648_P001	EnsemblPlants:Zm00001d016648_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Probable BOI-related E3 ubiquitin-protein ligase 2

Coordinates

chr5:-:171168618..171170170

Molecular Weight (calculated)

32111.0 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.143

Length

310 amino acids

Sequence
(BLAST)

001: MAVHAQYHAH AFPHDLRAIP SCPALDNATS ASAFLVADAD PAPAAGGNTA LSGLTRNGNS HGRGCLGGAR KRARVTMDLQ LQGQRALLPP VPQALASAGG
101: VQSRALCSGS ASTSQRPASA APVSQGLLPH IYRHSVEIDL LLRVETERLQ AGLQDARRRH ARAVLSAVGR GAARRLRAAE AGLERALARN AELDDRLRQT
201: VAEGQAWQGV AAGLRATLDS LTQAQAPCAG EGDVEDAQSC CFDLVEQEQG ADEASGGRTR ACRSCGDAEA CVLLLPCRHL CLCRGCEAAA GEACPVCAAT
301: KNGSLHVLLS

Best Arabidopsis Sequence Match ( AT1G79110.2 )
(BLAST)

001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.