Factsheet for Zm00001d003850_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10713	Sorghum	cytosol	84.73	81.32
Zm00001d025319_P001	Maize	cytosol	72.46	78.32
Zm00001d010503_P001	Maize	cytosol, mitochondrion	26.95	69.77
Zm00001d004743_P001	Maize	plastid	32.34	65.45
Zm00001d026161_P001	Maize	cytosol	26.65	63.12
TraesCS2A01G290000.1	Wheat	cytosol	60.78	62.65
TraesCS2B01G306500.1	Wheat	cytosol	59.88	61.73
TraesCS2D01G287900.1	Wheat	cytosol	57.48	60.0
Zm00001d025310_P001	Maize	cytosol	51.8	53.89
Zm00001d016648_P001	Maize	cytosol	49.4	53.23
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	52.4	53.03
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	36.83	41.55
Zm00001d052639_P001	Maize	extracellular	40.72	40.24
GSMUA_Achr10P...	Banana	nucleus	32.93	34.59
GSMUA_Achr6P16260_001	Banana	nucleus	34.73	34.42
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	29.04	29.39
GSMUA_Achr6P08300_001	Banana	plastid	30.24	29.19
Zm00001d003613_P002	Maize	nucleus	37.13	28.57
Zm00001d033419_P001	Maize	plastid	23.05	27.5
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	27.25	27.08
Zm00001d047069_P001	Maize	cytosol	26.05	26.2
Zm00001d051484_P001	Maize	nucleus, plastid	27.54	26.06
Zm00001d017649_P001	Maize	plastid	23.65	23.87
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	22.46	21.07
Zm00001d047856_P001	Maize	nucleus, plastid	19.76	20.06
Zm00001d028532_P001	Maize	nucleus, plastid	19.46	19.29

Protein Annotations

EntrezGene:100281271	Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1D6EBX3	ncoils:Coil	InterPro:E3ligase_BOI_like
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM17826.1
PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	UniParc:UPI000221B763
EnsemblPlantsGene:Zm00001d003850	EnsemblPlants:Zm00001d003850_P001	EnsemblPlants:Zm00001d003850_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Probable BOI-related E3 ubiquitin-protein ligase 2

Coordinates

chr2:+:62448255..62449800

Molecular Weight (calculated)

34434.8 Da

IEP (calculated)

6.824

GRAVY (calculated)

-0.144

Length

334 amino acids

Sequence
(BLAST)

001: MAVQAQHLLN PAFLPHDMGH AFRALEGATV GGGGSAFLDE LGFGGCAPAP APAPFEVAAF GDTQPRSELT CNGGGGDNSN VFLPRKRARV APGFLDDAHQ
101: QGLVLPVPQG QVFAGDVQSR EAGCGAASTS GRAAATTNGV LSLLYRQGME IDALVRLETE RMRAGLQEAR RRHARAVAAA VQRAAAGRLR LAEAELGRAR
201: RRNAELEERL RQLAAEGQAW LGVARSHEAV AAGLRATLDQ LLQQQQPGAG VGGGEAEDAR SCCFETSPPG PVADDCDAAS RGSSPPSCKS CGGGDASVLL
301: LPCRHLCLCR ACEAAAEACP VCGASKNASL QVLL

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.