Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G306500.1 | Wheat | cytosol | 95.31 | 94.14 |
| TraesCS2A01G290000.1 | Wheat | cytosol | 95.0 | 93.83 |
| Os04t0403200-01 | Rice | nucleus | 72.5 | 66.86 |
| Zm00001d003850_P001 | Maize | extracellular | 60.0 | 57.48 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 57.5 | 56.97 |
| Zm00001d025319_P001 | Maize | cytosol | 55.0 | 56.96 |
| EES10713 | Sorghum | cytosol | 61.88 | 56.9 |
| GSMUA_Achr10P... | Banana | nucleus | 36.56 | 36.79 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 34.38 | 32.64 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 33.12 | 30.64 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 25.62 | 28.28 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 25.62 | 28.28 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 26.25 | 27.72 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 24.69 | 24.61 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 20.62 | 24.35 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 20.0 | 24.33 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 23.75 | 24.28 |
| Os11t0543100-01 | Rice | cytosol | 15.0 | 24.12 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 23.12 | 24.03 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 25.0 | 23.95 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 23.12 | 23.57 |
| TraesCS4D01G215600.1 | Wheat | plastid | 23.75 | 22.42 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G287900.1 | EnsemblPlantsGene:TraesCS2D01G287900 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF2 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:368524841..368526209
Molecular Weight (calculated)
33668.9 Da
IEP (calculated)
5.646
GRAVY (calculated)
-0.136
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQARFLSH AFPHDLKAYR SMDASAPGNS QFLDEQAAVA CIGNNTVLSD LPRSELTCND NYGFAPRKRA RMAGDEPAGL ADLARQRLLL QQAAAMHGLM
101: LPCDAQSRAV GSGAASTSGR VANAAGLNTL LYNQGVEMDA LIRLETERIR AGLEEARRRH ARAALATVER AAAGRLQAVE AELERARYRN GELEEWLRQM
201: TAEGQAWLGV AKSHEAVAAG LRTTLDQLLQ PPCAVAGTAE GDADDAQSCC FETPAGDNAD DAASKAVAAA PSCKACGQAD ACVLLLPCRH LSLCGACEPS
301: VDTCPVCAAT KNASLHVLLS
101: LPCDAQSRAV GSGAASTSGR VANAAGLNTL LYNQGVEMDA LIRLETERIR AGLEEARRRH ARAALATVER AAAGRLQAVE AELERARYRN GELEEWLRQM
201: TAEGQAWLGV AKSHEAVAAG LRTTLDQLLQ PPCAVAGTAE GDADDAQSCC FETPAGDNAD DAASKAVAAA PSCKACGQAD ACVLLLPCRH LSLCGACEPS
301: VDTCPVCAAT KNASLHVLLS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.