Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G306500.1 | Wheat | cytosol | 95.68 | 95.68 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 93.83 | 95.0 |
| Os04t0403200-01 | Rice | nucleus | 74.69 | 69.74 |
| Zm00001d003850_P001 | Maize | extracellular | 62.65 | 60.78 |
| Zm00001d025319_P001 | Maize | cytosol | 57.1 | 59.87 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 59.26 | 59.44 |
| EES10713 | Sorghum | cytosol | 63.58 | 59.2 |
| GSMUA_Achr10P... | Banana | nucleus | 36.73 | 37.42 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 35.19 | 33.83 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 33.95 | 31.79 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 26.23 | 29.01 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 23.15 | 28.52 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 20.99 | 28.45 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 26.85 | 28.25 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 26.23 | 26.23 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 24.07 | 24.61 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 23.77 | 24.52 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 25.62 | 24.41 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 23.77 | 24.37 |
| Os11t0543100-01 | Rice | cytosol | 14.81 | 24.12 |
| TraesCS4A01G089200.1 | Wheat | plastid | 22.84 | 21.83 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 21.91 | 20.23 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G290000.1 | EnsemblPlantsGene:TraesCS2A01G290000 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF2 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2A:-:498840377..498841901
Molecular Weight (calculated)
33848.2 Da
IEP (calculated)
6.038
GRAVY (calculated)
-0.089
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQARFLSH AFPHDLNAYR SMDAAAPGAS HLLDEHAGCA PAVACIGNNT VLSDLPRSEL TCNDNYGFVP RKRARMAGDE PAGLADLARQ RLVLQQAAAM
101: HGLMLPCDAQ SRAVGSGAAS TSGRMANAAG LNTLLYNQGV EMDALIRLET ERIRAGLEEA RRRHARAVLA TVERAAAGRL QAVEAELERA RYRNGELEER
201: LRQMTAEGQA WLGVAKSHEA VAAGLRATLD QLLQPPCAVA GAAEGDADDA QSCCFETPAG DNADDAASKA VAAAPSCKAC GQGDACVLLL PCRHLSLCGA
301: CEPAVDTCPV CGATKNASLH VLLS
101: HGLMLPCDAQ SRAVGSGAAS TSGRMANAAG LNTLLYNQGV EMDALIRLET ERIRAGLEEA RRRHARAVLA TVERAAAGRL QAVEAELERA RYRNGELEER
201: LRQMTAEGQA WLGVAKSHEA VAAGLRATLD QLLQPPCAVA GAAEGDADDA QSCCFETPAG DNADDAASKA VAAAPSCKAC GQGDACVLLL PCRHLSLCGA
301: CEPAVDTCPV CGATKNASLH VLLS
001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS
Arabidopsis Description
BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.