Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g061020.2.1 | Tomato | nucleus | 91.81 | 94.86 |
| PGSC0003DMT400004642 | Potato | nucleus | 76.02 | 75.14 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 61.11 | 62.02 |
| PGSC0003DMT400052841 | Potato | nucleus | 59.65 | 58.45 |
| KRH77271 | Soybean | plastid | 54.09 | 57.45 |
| KRH28216 | Soybean | nucleus | 53.22 | 55.32 |
| KRH04275 | Soybean | nucleus | 54.39 | 52.1 |
| KRH57556 | Soybean | nucleus | 52.63 | 51.43 |
| Bra024967.1-P | Field mustard | plastid | 36.55 | 50.61 |
| AT5G47050.1 | Thale cress | nucleus | 42.98 | 49.0 |
| CDY33511 | Canola | nucleus | 42.11 | 47.52 |
| CDX77733 | Canola | nucleus | 41.52 | 47.33 |
| AT1G32740.1 | Thale cress | nucleus | 42.98 | 47.12 |
| Bra017511.1-P | Field mustard | nucleus | 41.23 | 46.69 |
| CDY43447 | Canola | nucleus | 41.23 | 46.69 |
| CDY51856 | Canola | cytosol | 40.94 | 46.2 |
| CDY37172 | Canola | cytosol | 40.64 | 46.03 |
| AT4G17680.1 | Thale cress | nucleus | 39.77 | 43.31 |
| CDY03162 | Canola | cytosol | 40.64 | 43.17 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 40.94 | 42.42 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 35.38 | 41.87 |
| Bra022093.1-P | Field mustard | nucleus | 26.61 | 41.36 |
| CDY09609 | Canola | cytosol | 29.82 | 41.3 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 32.16 | 40.89 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 35.38 | 39.67 |
| CDX90458 | Canola | cytosol | 35.09 | 39.47 |
| Zm00001d047069_P001 | Maize | cytosol | 37.43 | 38.55 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 37.43 | 38.32 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 36.26 | 38.27 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 37.43 | 37.98 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 37.43 | 37.87 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 35.09 | 37.74 |
| Os10t0565500-01 | Rice | nucleus | 38.01 | 37.04 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 37.13 | 37.03 |
| EES05709 | Sorghum | nucleus | 38.01 | 36.83 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 36.55 | 36.76 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 37.13 | 36.49 |
| Zm00001d017649_P001 | Maize | plastid | 34.8 | 35.95 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 35.09 | 35.71 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 33.33 | 35.51 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 33.63 | 35.49 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 36.55 | 35.41 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 33.92 | 35.37 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 33.33 | 34.97 |
| Bra012650.1-P | Field mustard | nucleus | 33.33 | 32.66 |
| PGSC0003DMT400035059 | Potato | nucleus | 27.49 | 28.31 |
| PGSC0003DMT400015829 | Potato | nucleus | 19.3 | 26.19 |
| PGSC0003DMT400046745 | Potato | nucleus | 23.68 | 24.4 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 18.71 | 24.24 |
| PGSC0003DMT400062617 | Potato | nucleus | 19.3 | 22.0 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 19.3 | 20.43 |
| PGSC0003DMT400020551 | Potato | nucleus | 20.76 | 18.98 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068387 | EnsemblPlantsGene:PGSC0003DMG400026593 | EntrezGene:102602558 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 |
| PFAM:PF13920 | PFscan:PS50089 | PGSC:PGSC0003DMG400026593 | PIRSF:PIRSF036836 | RefSeq:XP_006361168.1 | SEG:seg |
| UniParc:UPI0002966737 | UniProt:M1CIZ8 | MapMan:35.2 | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400026593]
Coordinates
chr6:-:44393173..44395156
Molecular Weight (calculated)
37912.5 Da
IEP (calculated)
7.131
GRAVY (calculated)
-0.639
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQYPSN AHLFNRAVQE RKNPLGNDDY SLQPQPGGGS ILDHTQMLFN PGAGSYHACK RRREVSTTTA MNPSMQSQPQ LIDLTQLHTN PQQPNVVSTG
101: LRLASGEQLQ QQHQQHQLHQ QYQKQQQQNQ HSLSPQSSQS SAFYSIFTED ISTIIKQHRD EIEQFLHVQR EQLRRTLEDK RRTHYRALIG TAKESMARQL
201: KEKEAEVGKA VRHNAELEAR AAQLSAEAQA WQARARAEEF TAATLQAQLQ QAMMNGGGCN ANLPDGDIAG AGEAEDAESA YIDPDRVVES TGPSCKACRK
301: RAASVVLLPC RHLCVCTDCD AVVQACPLCL SIRSSSVEVF LC
101: LRLASGEQLQ QQHQQHQLHQ QYQKQQQQNQ HSLSPQSSQS SAFYSIFTED ISTIIKQHRD EIEQFLHVQR EQLRRTLEDK RRTHYRALIG TAKESMARQL
201: KEKEAEVGKA VRHNAELEAR AAQLSAEAQA WQARARAEEF TAATLQAQLQ QAMMNGGGCN ANLPDGDIAG AGEAEDAESA YIDPDRVVES TGPSCKACRK
301: RAASVVLLPC RHLCVCTDCD AVVQACPLCL SIRSSSVEVF LC
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.