Factsheet for PGSC0003DMT400068308

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008036
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400033117
PGSC0003DMT400050252
PGSC0003DMT400067114
PGSC0003DMT400076703
PGSC0003DMT400083086
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT1G67170.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT1G67170.1	PGSC0003DMT400092162	AT3G51180.1	21798944
AT1G67170.1	PGSC0003DMT400067114	AT4G32570.1	21798944
AT1G67170.1	PGSC0003DMT400033117	AT5G04170.1	21798944
AT1G67170.1	PGSC0003DMT400076703	AT5G04170.1	21798944
AT1G67170.1	PGSC0003DMT400050252	AT5G61380.1	21798944
AT1G67170.1	PGSC0003DMT400083086	AT5G61380.1	21798944
AT1G67170.1	PGSC0003DMT400008036	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065630.2.1	Tomato	nucleus	90.93	92.99
VIT_14s0083g00450.t01	Wine grape	mitochondrion	55.09	57.51
KRH01477	Soybean	nucleus	46.24	51.73
CDY12623	Canola	nucleus	34.29	48.9
Os02t0192100-01	Rice	mitochondrion	26.99	48.8
AT1G67170.1	Thale cress	nucleus	37.39	47.08
Bra034018.1-P	Field mustard	nucleus	31.86	47.06
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.91	46.88
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	35.62	46.8
Bra004207.1-P	Field mustard	nucleus	35.4	46.51
CDY01786	Canola	cytosol	35.4	45.98
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	21.02	39.92
TraesCS6D01G159700.1	Wheat	nucleus	40.04	38.76
TraesCS6A01G169900.1	Wheat	nucleus	39.82	38.54
HORVU6Hr1G034720.1	Barley	nucleus	38.5	38.24
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	39.82	37.97
CDY54119	Canola	mitochondrion	29.65	36.71
EES06432	Sorghum	mitochondrion	38.05	34.47
PGSC0003DMT400006407	Potato	mitochondrion, nucleus	18.58	30.22
PGSC0003DMT400037712	Potato	nucleus	17.04	29.39
PGSC0003DMT400029024	Potato	mitochondrion	20.13	29.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400068308	EnsemblPlantsGene:PGSC0003DMG400026557	EntrezGene:102596197	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5
PGSC:PGSC0003DMG400026557	RefSeq:XP_006365646.1	SEG:seg	UniParc:UPI0002969F16	UniProt:M1CIT9	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026557]

Coordinates

chr2:-:24853145..24859726

Molecular Weight (calculated)

48790.7 Da

IEP (calculated)

6.973

GRAVY (calculated)

-0.833

Length

452 amino acids

Sequence
(BLAST)

001: MGSKGRGPPP NIRRPPPGPG MMYPDSFGPP MHNPPPGDFP PFDRLPPPEI LEHKIGAQHL EMQKLTTENQ RLAATHVTLR RDLAAAQHEL QMLHVQIEAV
101: KANREQETKG LNDKISRIEA ELQATESIKK ELPQAQGEAR TLFAARQELV AKIQMLTQDL QRAHTDVLHI PRLLADLESL KKEYQQCRTT YEFERKLYSD
201: HLESLQVMEK NYMTMSREVE KLRAELTNTS NSDRQTGGPY GGSTGYNEND ATNNYATGQN IYADGYGIYQ GRGSVPTGTN VGGVPAVTSP QVGAQSVPPS
301: NRPPYDASNI PGYDAQRGIR VPAGHGYEAQ MGSSGPGYDA QRGSGLAAYE AQRGHGYDAQ RTAGYEAYRG PGYDAYGAPV YDAQRGSGYD VQRGANYDPT
401: KASNYDASSK AGVATQGQVA ATGNAPPGAA PSPGHVGPGY DASAQGGNPA RR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.