Factsheet for PGSC0003DMT400050252

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001574
PGSC0003DMT400008944
PGSC0003DMT400035000
PGSC0003DMT400044195
PGSC0003DMT400047079
PGSC0003DMT400051416
PGSC0003DMT400051746
PGSC0003DMT400051934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	PGSC0003DMT400008944	AT1G33470.1	21798944
AT5G61380.1	PGSC0003DMT400051416	AT1G68050.1	14654842
AT5G61380.1	PGSC0003DMT400035000	AT2G33410.1	21798944
AT5G61380.1	PGSC0003DMT400044195	AT2G33410.1	21798944
AT5G61380.1	PGSC0003DMT400047079	AT2G46970.1	11828029
AT5G61380.1	PGSC0003DMT400051746	AT3G24650.1	10743655
AT5G61380.1	PGSC0003DMT400051934	AT3G24650.1	10743655
AT5G61380.1	PGSC0003DMT400001574	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115770.2.1	Tomato	nucleus	96.55	96.38
PGSC0003DMT400083086	Potato	nucleus	67.33	67.58
VIT_17s0000g06570.t01	Wine grape	nucleus	65.88	65.88
KRH54582	Soybean	nucleus	62.25	61.47
KRH63298	Soybean	nucleus	61.89	60.89
KRH56889	Soybean	nucleus	62.07	59.48
KRH03510	Soybean	nucleus	60.98	58.03
CDX87210	Canola	nucleus	50.45	55.49
Bra035933.1-P	Field mustard	nucleus	50.09	54.22
CDY02151	Canola	nucleus	51.72	52.1
Bra012964.1-P	Field mustard	nucleus	52.63	50.35
CDY64140	Canola	nucleus	51.91	49.91
AT5G61380.1	Thale cress	nucleus	54.08	48.22
GSMUA_Achr10P...	Banana	nucleus	44.46	45.2
GSMUA_Achr2P04570_001	Banana	nucleus	44.83	44.99
GSMUA_Achr9P19550_001	Banana	nucleus	43.01	44.97
Os02t0618200-01	Rice	nucleus	41.92	44.59
TraesCS6B01G253900.1	Wheat	nucleus	40.65	43.41
EES05438	Sorghum	nucleus	40.65	42.75
HORVU6Hr1G057630.1	Barley	nucleus	40.47	42.72
Zm00001d017241_P002	Maize	nucleus	39.75	42.36
Zm00001d051114_P001	Maize	nucleus	40.11	40.48
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	40.83	40.04
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	40.83	39.75
Zm00001d003811_P001	Maize	cytosol	20.51	35.09
Zm00001d018818_P001	Maize	cytosol	18.51	33.55
Zm00001d043140_P001	Maize	cytosol	18.51	33.55
Zm00001d044406_P001	Maize	cytosol	17.97	32.57
Zm00001d005366_P001	Maize	cytosol	22.5	22.88
PGSC0003DMT400029402	Potato	nucleus	20.87	17.97
PGSC0003DMT400001574	Potato	nucleus	20.33	16.4

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	ncoils:Coil	GO:GO:0000160
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789
InterPro:IPR010402	UniProt:M1BQ07	PFAM:PF00072	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400019518	PGSC:PGSC0003DMG400019518
EnsemblPlants:PGSC0003DMT400050252	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI00029527E0	SEG:seg	:	:

Description

Pseudo response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400019518]

Coordinates

chr3:-:55634633..55641670

Molecular Weight (calculated)

62664.4 Da

IEP (calculated)

6.613

GRAVY (calculated)

-0.650

Length

551 amino acids

Sequence
(BLAST)

001: MEKNKIIKSG DGFIDRSKVR ILLCDKDLSS SQEVLTLLCK CSYQVTLVRS PRQVIDALNA EGPDIDIILS EVDLPITKGY KMLKYIMKDK ELRRIPVIMM
101: SSQDEVSIVV KCLKFGAADY LVKPLRTNEL LNLWTHMWRR RQMLGLAEKN ILSYDFDLIL SDPSDHNTNS TTLFSDDTDD KSRKSVNLEL CSSIQFEDEI
201: NAATTTAAVE TVVVVPFECQ YNVPGTNNRQ TGRISSFPKK SELKIGESSA FFTYVKSGMP KSNDQGMIST HENVAHQSRM EEKTNAAVGH LEIETQMQVN
301: GDAVENHSHV DDYPSSNSLP DSYSMERSST PPLSLELPQQ RNSKMEEFSQ VYMHLRNEAQ RDAVNFHIPN AYSYFMPGAM NQVMMPPSAQ MYQKNLQDLH
401: NHANSAASPQ YNHMPPCPPH MHGMSSFPYY PMGLCLRPGE MPTPHQWPTI GNSPSAEGKW SKVDRRKAAL LKFRQKRKER CFDKKIRYVN RKKLAERRPR
501: VRGQFVRKVN GVNVDLNGHP ASADYDVDEE EDEEEQTGNF DSPEDDPSMC L

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.