Factsheet for PGSC0003DMT400047079

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050252
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	PGSC0003DMT400050252	AT5G61380.1	11828029
AT2G46970.1	PGSC0003DMT400083086	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102300.2.1	Tomato	nucleus	92.8	91.89
VIT_07s0005g02510.t01	Wine grape	nucleus	14.41	51.0
Bra020017.1-P	Field mustard	nucleus	26.69	38.26
AT1G09530.3	Thale cress	nucleus	27.97	37.79
CDY64745	Canola	nucleus	26.69	37.65
KRH68390	Soybean	nucleus	32.34	36.7
CDX94963	Canola	nucleus	25.71	36.55
KRG96663	Soybean	nucleus	32.63	36.49
Bra031668.1-P	Field mustard	nucleus	25.14	36.18
CDY22636	Canola	nucleus	25.0	36.05
CDY06358	Canola	nucleus	24.86	35.85
KRH69138	Soybean	cytosol, nucleus, vacuole	7.77	30.56
Zm00001d040536_P005	Maize	nucleus	24.43	30.51
KXG32305	Sorghum	nucleus	25.99	30.46
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	25.28	30.19
Zm00001d024783_P001	Maize	nucleus	21.33	29.9
Os05t0139100-01	Rice	nucleus	21.05	29.5
PGSC0003DMT400015377	Potato	nucleus	8.19	28.57
Os01t0286100-01	Rice	nucleus	25.71	28.57
PGSC0003DMT400020534	Potato	nucleus	12.57	28.34
HORVU1Hr1G017900.1	Barley	nucleus	19.63	28.19
TraesCS1D01G084200.1	Wheat	nucleus	19.77	27.89
TraesCS1B01G100400.2	Wheat	nucleus	19.77	27.89
TraesCS1A01G083000.1	Wheat	nucleus	19.77	27.61
PGSC0003DMT400038134	Potato	nucleus	19.77	27.18
PGSC0003DMT400041156	Potato	nucleus	19.49	26.69
Zm00001d008205_P001	Maize	nucleus	24.01	26.65
PGSC0003DMT400048756	Potato	nucleus	21.75	26.64
CDX67873	Canola	nucleus	11.44	26.38
Bra003483.1-P	Field mustard	nucleus	11.44	26.38
AT3G62090.2	Thale cress	nucleus	13.14	25.62
KRH33663	Soybean	nucleus	16.1	25.39
AT2G46970.1	Thale cress	nucleus	14.55	24.76
CDX80064	Canola	nucleus	13.84	24.5
Bra004489.1-P	Field mustard	nucleus	13.84	24.5
CDY65446	Canola	nucleus	11.44	24.47
PGSC0003DMT400010253	Potato	nucleus	12.99	24.47
KRH68348	Soybean	nucleus	17.66	24.18
CDX83349	Canola	nucleus	13.7	24.01
Bra000436.1-P	Field mustard	nucleus	13.56	23.76
CDY66254	Canola	nucleus	12.99	23.0
KRG96615	Soybean	nucleus	16.81	22.97
CDY50911	Canola	nucleus	8.76	22.88
PGSC0003DMT400066807	Potato	nucleus	14.83	22.63
KXG21255	Sorghum	nucleus	21.75	22.38
PGSC0003DMT400063117	Potato	nucleus	13.56	21.97
CDX76616	Canola	extracellular	10.73	21.23
CDY11401	Canola	extracellular	10.45	21.02
PGSC0003DMT400083164	Potato	nucleus	12.29	20.91
PGSC0003DMT400049768	Potato	nucleus	8.76	20.53
PGSC0003DMT400034840	Potato	nucleus	8.47	20.27
PGSC0003DMT400020244	Potato	nucleus	10.17	18.85
PGSC0003DMT400015596	Potato	nucleus	8.05	18.81
Bra007660.1-P	Field mustard	nucleus	11.02	18.48
PGSC0003DMT400028917	Potato	nucleus	10.88	17.34

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BK41
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400018280	PGSC:PGSC0003DMG400018280	EnsemblPlants:PGSC0003DMT400047079	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296C363	InterPro:bHLH_dom	SEG:seg

Description

Helix-loop-helix DNA-binding [Source:PGSC_GENE;Acc:PGSC0003DMG400018280]

Coordinates

chr1:+:79007967..79013234

Molecular Weight (calculated)

75830.8 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.641

Length

708 amino acids

Sequence
(BLAST)

001: MAIGKLESGQ QKISSTTNLS SFPENDLIEL KWQNGQIVMQ GQSSSAKKST VHNNFQSSAS GDRDKYTGNS STSKIGKFGL MDTMLNDMSL SVPTDELDLI
101: QEDEGVPWLG YPADDSLQQD YCAQLLPEIS GVTANEQSRQ SVFGLINKRG SSDKMIGDSH SVPVHNAVNF EQRNTSKVSP SSRFSPLSSL PSQKGHASIP
201: TLESGVSDIF SSKNSNTPMS VLGDSNQSKA SAGDVKSNKI QKQNMPGNRS NLLNFSHFSR PATFVKAAKL QSSTGGSNVS DSPILEAKGK KGGEKVAIGD
301: NHVSAAATEN YLTSKKDNVP HYPTNGVPSQ LESRPSGASF HDRSCQVEQS DNAFRDCSSN NDNTRDQFTG AKATKDIADG ERNVEHGVAC SSVCSGSSAE
401: RGSSDQPLNL KRKTRDNEES ECRSEDVEEE SVGIKKTCAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD EAIEYLKTLQ
501: LQVQIMSMGT GFCVPPMMFP TGVQHMHGAQ MPHFAPMSLG MGMGMGMGMG FGMGMLEMNG RSSGYPMYPM PSVQGGHFPS PPIPASTAYP GIAVSNRHAY
601: AHPGQGLPMS IPRASLGPLA GQPSTGAAVP MNVARAGVPV EIRSAPPNLD SKTPVHKNSQ IVQNAEASRP QNQTCSQVQA TNEVLEKSAQ KNDQLPDAID
701: SAANRLTN

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.