Factsheet for PGSC0003DMT400028917

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005400.2.1	Tomato	nucleus	94.14	95.0
PGSC0003DMT400020244	Potato	nucleus	61.71	71.73
VIT_11s0037g00040.t01	Wine grape	nucleus	64.64	56.94
KRH12909	Soybean	nucleus	56.76	53.05
KRH37912	Soybean	nucleus	57.43	52.04
GSMUA_Achr4P01910_001	Banana	nucleus	49.55	49.0
GSMUA_Achr3P04630_001	Banana	nucleus	52.48	47.75
PGSC0003DMT400034840	Potato	nucleus	30.18	45.27
PGSC0003DMT400015596	Potato	nucleus	30.41	44.55
PGSC0003DMT400049768	Potato	nucleus	29.5	43.38
PGSC0003DMT400015377	Potato	nucleus	10.59	23.15
PGSC0003DMT400010253	Potato	nucleus	13.96	16.49
PGSC0003DMT400020534	Potato	nucleus	11.49	16.24
PGSC0003DMT400041156	Potato	nucleus	16.22	13.93
PGSC0003DMT400066807	Potato	nucleus	14.19	13.58
PGSC0003DMT400063117	Potato	nucleus	13.29	13.5
PGSC0003DMT400048756	Potato	nucleus	17.12	13.15
PGSC0003DMT400038134	Potato	nucleus	14.64	12.62
PGSC0003DMT400083164	Potato	nucleus	10.59	11.3
PGSC0003DMT400047079	Potato	nucleus	17.34	10.88

Protein Annotations

EntrezGene:102592871	MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1ARW2	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400011133	PGSC:PGSC0003DMG400011133	EnsemblPlants:PGSC0003DMT400028917	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002962754	RefSeq:XP_006343666.1	InterPro:bHLH_dom	SEG:seg

Description

Joka8 [Source:PGSC_GENE;Acc:PGSC0003DMG400011133]

Coordinates

chr7:+:599451..604282

Molecular Weight (calculated)

46274.0 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.495

Length

444 amino acids

Sequence
(BLAST)

001: MQAMNSLLSQ QQQSQMSLQD LQNGGNGGST GGVGGLGQHN MGNFHFDPTS SHDDFLEQIL SSVPSSSPWP DLSKSWDPHH HLSSPPHNPS SGEDQPPSNP
101: LHSQFHYDDQ ASSLLASKLR QHQITGGGAA AAAKALMLQQ QLLLSRTLAG NGLRSPNGAS GDNGLLSLPL NLSNNGDQND GVANPANDNS VQALFNGFTG
201: SLGQTSNQPQ HFHHPQGGSM QSQSFGAPAM NQTPAASGSV GGGGGSTPAA QPKQQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS
301: MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRGEGNVGRG GNGTAASSSN SETMTVTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT
401: AISTSTRIPL LSPEATSPTL SALTVQSATI GNAAGKDATS LSEP

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.