Factsheet for Solyc07g005400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028917	Potato	nucleus	95.0	94.14
Solyc12g010170.1.1	Tomato	nucleus	61.59	70.03
VIT_11s0037g00040.t01	Wine grape	nucleus	63.86	55.75
KRH12909	Soybean	nucleus	56.59	52.42
KRH37912	Soybean	nucleus	56.82	51.02
GSMUA_Achr4P01910_001	Banana	nucleus	48.64	47.66
GSMUA_Achr3P04630_001	Banana	nucleus	51.36	46.31
Solyc03g005350.2.1	Tomato	nucleus	29.77	44.26
Solyc09g083220.2.1	Tomato	nucleus	29.77	43.09
Solyc09g065820.2.1	Tomato	nucleus	28.64	41.72
Solyc04g007430.1.1	Tomato	nucleus	9.55	22.83
Solyc04g078690.2.1	Tomato	nucleus	11.82	16.56
Solyc02g093280.2.1	Tomato	nucleus	13.64	15.87
Solyc07g043580.2.1	Tomato	nucleus	15.91	14.14
Solyc01g090790.2.1	Tomato	nucleus	14.55	13.79
Solyc09g063010.2.1	Tomato	nucleus	17.27	13.64
Solyc03g115540.1.1	Tomato	nucleus	13.18	13.21
Solyc06g008030.2.1	Tomato	nucleus	15.23	13.09
Solyc10g018510.1.1	Tomato	nucleus	11.36	12.79
Solyc06g069600.1.1	Tomato	nucleus	10.68	11.35
Solyc01g102300.2.1	Tomato	nucleus	16.14	9.93

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4CB12	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc07g005400.2	EnsemblPlants:Solyc07g005400.2.1	UniParc:UPI000276BDCC	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:309636..314079

Molecular Weight (calculated)

45918.3 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.562

Length

440 amino acids

Sequence
(BLAST)

001: MNSLLSQQQQ SQISLQDLQN GGNGGSTGGV GGLSQHSMGH SHFDPTSSHD DFLEQILSSV PSSSPWPDLS KSWDPHHHLS SPPHNPSSGE DQPPSNPFHS
101: QFHYDDQASS LLASKLRQHQ ITSGGGAAAA AKALMLQQQL LLSRTLAGNG LRSPNGASGD NGLLSLPLNL SNGDQNDGVA NPTNDNSVQA LFNGFTGSLG
201: QTSNQPQHFH HPQGGSMQSQ SFGAPAMNQT PAASGSAGGG GGSTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERL KALQELVPNA NKTDKASMLD
301: EIIDYVKFLQ LQVKVLSMSR LGGAPLVADM SSEGRGEGNV GRGGNGRASS SSNNETMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTT
401: RISNNPLLAP EAGGSTSPTL SALTVQSATA GKDATSLSET

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.