Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083164 | Potato | nucleus | 80.19 | 79.81 |
| Solyc03g115540.1.1 | Tomato | nucleus | 52.42 | 49.43 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 46.38 | 45.39 |
| KRH54630 | Soybean | nucleus | 36.96 | 38.06 |
| Solyc01g090790.2.1 | Tomato | nucleus | 28.02 | 25.0 |
| Solyc10g018510.1.1 | Tomato | nucleus | 23.19 | 24.55 |
| Solyc04g007430.1.1 | Tomato | nucleus | 9.42 | 21.2 |
| Solyc04g078690.2.1 | Tomato | nucleus | 14.49 | 19.11 |
| Solyc02g093280.2.1 | Tomato | nucleus | 14.73 | 16.14 |
| Solyc07g043580.2.1 | Tomato | nucleus | 18.12 | 15.15 |
| Solyc09g063010.2.1 | Tomato | nucleus | 20.05 | 14.9 |
| Solyc06g008030.2.1 | Tomato | nucleus | 17.87 | 14.45 |
| Solyc03g005350.2.1 | Tomato | nucleus | 9.42 | 13.18 |
| Solyc09g083220.2.1 | Tomato | nucleus | 9.66 | 13.16 |
| Solyc01g102300.2.1 | Tomato | nucleus | 20.05 | 11.61 |
| Solyc09g065820.2.1 | Tomato | nucleus | 8.21 | 11.26 |
| Solyc12g010170.1.1 | Tomato | nucleus | 10.39 | 11.11 |
| Solyc07g005400.2.1 | Tomato | nucleus | 11.35 | 10.68 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K4C8D3 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF285 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc06g069600.1 |
| EnsemblPlants:Solyc06g069600.1.1 | UniParc:UPI0002766B58 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:+:43345470..43347563
Molecular Weight (calculated)
46586.2 Da
IEP (calculated)
9.348
GRAVY (calculated)
-0.826
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHHTWNFSH QKQEQQVVEK EEEENRYTRG HVHNQQNQVD PMSNKCEVAE LTWENGQVAM HRLGSNLSNE QTKHTWGKAG DTLESIVHQA TFQKQHHSYI
101: MGSDGQNQAN INREKNVSYG AQQTRGVLKR MRSSDSDPQL YIGGISLEHL NARASAKDND ITMITWPCNE DSACHGGSEN KEEERETKSS NPSKRSRRAA
201: VHNQSERRRR DRINEKMKAL QKLVPNASKT NKASMLEEVI KYLKQLQAQI QLISYAKNME QQMMMMSLGM QPAHIQMPLL ATMGMCSSTT GILNNMTSNL
301: APAPYQSLIG GRAPLIYPTS SMPTLFPPFM SPPFATASSI PSTPPQPINA ESISPKLTKY AAPPNIAAST SFPFSHPYNA YLPHSMKMEF NNEMAAQYLQ
401: RGNQENVNIQ GQKK
101: MGSDGQNQAN INREKNVSYG AQQTRGVLKR MRSSDSDPQL YIGGISLEHL NARASAKDND ITMITWPCNE DSACHGGSEN KEEERETKSS NPSKRSRRAA
201: VHNQSERRRR DRINEKMKAL QKLVPNASKT NKASMLEEVI KYLKQLQAQI QLISYAKNME QQMMMMSLGM QPAHIQMPLL ATMGMCSSTT GILNNMTSNL
301: APAPYQSLIG GRAPLIYPTS SMPTLFPPFM SPPFATASSI PSTPPQPINA ESISPKLTKY AAPPNIAAST SFPFSHPYNA YLPHSMKMEF NNEMAAQYLQ
401: RGNQENVNIQ GQKK
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.