Factsheet for Solyc03g115540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063117	Potato	nucleus	94.76	95.19
VIT_17s0000g06930.t01	Wine grape	nucleus	52.16	54.14
Solyc06g069600.1.1	Tomato	nucleus	49.43	52.42
KRH54630	Soybean	nucleus	39.41	43.03
Solyc01g090790.2.1	Tomato	nucleus	32.8	31.03
Solyc10g018510.1.1	Tomato	nucleus	26.42	29.67
Solyc04g007430.1.1	Tomato	nucleus	9.79	23.37
Solyc04g078690.2.1	Tomato	nucleus	15.49	21.66
Solyc02g093280.2.1	Tomato	nucleus	15.95	18.52
Solyc06g008030.2.1	Tomato	nucleus	21.18	18.16
Solyc07g043580.2.1	Tomato	nucleus	20.05	17.78
Solyc09g063010.2.1	Tomato	nucleus	22.55	17.77
Solyc03g005350.2.1	Tomato	nucleus	11.62	17.23
Solyc09g083220.2.1	Tomato	nucleus	11.39	16.45
Solyc09g065820.2.1	Tomato	nucleus	10.71	15.56
Solyc12g010170.1.1	Tomato	nucleus	11.85	13.44
Solyc07g005400.2.1	Tomato	nucleus	13.21	13.18
Solyc01g102300.2.1	Tomato	nucleus	21.41	13.15

Protein Annotations

EnsemblPlants:Solyc03g115540.1.1	EnsemblPlantsGene:Solyc03g115540.1	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF285	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002768967	UniProt:K4BL56	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chr3:+:65211969..65214204

Molecular Weight (calculated)

48317.7 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.681

Length

439 amino acids

Sequence
(BLAST)

001: MSHCTVPTWN PSYQRQEHVV EAEEANKYPH LHNQQIQINH LLPMSSKCEE VAELTWEKGQ LGMHGLGGIL SISQAKQTLG RTGDTLESIV HQATYHAKNQ
101: TSIHQNYAQN EDQDLKTGVL YSGGKWGESS QQMAPPRATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN DTTMVTWPSF DESSRSIKSK
201: TACDEDSACH GGGSENKEEE HETKRSNSSR RSRAAAVHNQ SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMAPQM
301: MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AASATTHPNQ MTTAPINIPF TPSGAFALPA APANSVSPAS ATTSTTTNSI PFTNPYSAFL
401: PQSMDMEFFN NMAALYRQQL ANQSTQITGS KLNQENQTE

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.