Factsheet for Solyc06g008030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 30362122

gfp PMID: 30362122 doi

G Gramegna, D Rosado, AP Sánchez Carranza, AB Cruz, M Simon-Moya, B Llorente, M Rodríguez-Concepcíon, L Freschi, M Rossi

Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, 08193, Barcelona, Spain., CSIRO Synthetic Biology Future Science Platform, 3004, Melbourne, Australia., Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-900, SP, Brazil., Department of Molecular Sciences, Macquarie University, 2109, New South Wales, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102300.2.1
Solyc06g008030.2.1
Solyc06g069590.2.1
Solyc07g043580.2.1
Solyc09g063010.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	Solyc06g008030.2.1	AT2G20180.2	21928113
AT2G20180.2	Solyc09g063010.2.1	AT2G20180.2	21928113
AT2G20180.2	Solyc07g043580.2.1	AT3G59060.2	21928113
AT2G20180.2	Solyc01g102300.2.1	AT3G62090.2	21928113
AT2G20180.2	Solyc06g069590.2.1	AT5G61270.1	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038134	Potato	nucleus	84.57	84.08
Solyc09g063010.2.1	Tomato	nucleus	59.57	54.76
AT2G20180.2	Thale cress	nucleus	37.5	40.17
GSMUA_Achr1P16830_001	Banana	extracellular	19.53	38.91
CDY31989	Canola	nucleus	35.16	37.82
CDY05725	Canola	nucleus	36.13	36.49
Solyc07g043580.2.1	Tomato	nucleus	25.2	26.06
Solyc04g078690.2.1	Tomato	nucleus	14.06	22.93
Solyc02g093280.2.1	Tomato	nucleus	16.41	22.22
Solyc04g007430.1.1	Tomato	nucleus	7.81	21.74
Solyc03g115540.1.1	Tomato	nucleus	18.16	21.18
Solyc01g090790.2.1	Tomato	nucleus	19.14	21.12
Solyc03g005350.2.1	Tomato	nucleus	11.33	19.59
Solyc01g102300.2.1	Tomato	nucleus	26.37	18.88
Solyc09g083220.2.1	Tomato	nucleus	10.94	18.42
Solyc10g018510.1.1	Tomato	nucleus	13.87	18.16
Solyc06g069600.1.1	Tomato	nucleus	14.45	17.87
Solyc12g010170.1.1	Tomato	nucleus	13.28	17.57
Solyc09g065820.2.1	Tomato	nucleus	9.96	16.89
Solyc07g005400.2.1	Tomato	nucleus	13.09	15.23

Protein Annotations

EnsemblPlants:Solyc06g008030.2.1	EnsemblPlantsGene:Solyc06g008030.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002766527	UniProt:K4C3I3	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

No Description!

Coordinates

chr6:-:1865425..1869982

Molecular Weight (calculated)

56184.4 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.570

Length

512 amino acids

Sequence
(BLAST)

001: MNYCVVPDFK MDDDYYDIPS AIFNKKSTIA DEEIMELVWQ NGGVIMQSQN QRSVRKSNLF PEQSAVEQTV AVSAPLYMQE DEMNSWLQSP LDDSSFDDFL
101: NTTPSCDAVT SAAAAPPGEI GTSKVEIRPP LVPPCSRPIR CTEGELPHRL QNFGHFSRLS GEAVLRNGTT SSSGHSVRAS TIVDSNETPV AARVSENVTP
201: VTAMNVRGRE LTATSMATTS GGREVTMACE LALTASTRGS GGSVSARAGP PQPSHTEADT AAYDRKRKSR ESDDNEGQSE DVEYEFADAR KQVRSSTSAK
301: KSRAAEVHNL SERKRRDRIN EKMKALQELI PCCNKSDKAS MLDEAIEYLK SLQLQVQMMA TGCSMVPMMY PGIPQYMPTM GMNMSMGMDM KMGRNRPLIS
401: YPPLMPGPAM QNAAAAAQMA PQYPLPAYHL PPFPAPDPSR IPVANQPNSH VGHNISQPRL PNFSDPYYQY FGLQQAQLML PQNQEVEQLS SSKLNSCIEG
501: SRGNHQSGEH TI

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.