Factsheet for Solyc02g093280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g088790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	Solyc12g088790.1.1	AT3G50330.1	17855426
AT4G36930.1	Solyc12g088790.1.1	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010253	Potato	nucleus	87.04	87.5
GSMUA_Achr9P11300_001	Banana	nucleus	11.9	71.43
TraesCS6A01G190600.1	Wheat	nucleus	17.72	51.94
Bra010591.1-P	Field mustard	nucleus, plastid	35.71	39.59
CDY44048	Canola	nucleus, plastid	35.71	39.59
CDX75629	Canola	nucleus	35.98	39.31
Bra011740.1-P	Field mustard	nucleus, plastid	36.51	38.98
CDX69281	Canola	nucleus, plastid	35.98	38.97
CDY22448	Canola	nucleus, plastid	36.24	38.92
AT4G36930.1	Thale cress	nucleus	38.1	38.61
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	17.99	34.52
Solyc04g078690.2.1	Tomato	nucleus	28.57	34.39
OQU75890	Sorghum	nucleus	25.66	33.33
GSMUA_Achr10P...	Banana	plastid	28.57	31.49
GSMUA_Achr8P15670_001	Banana	nucleus	29.37	31.44
TraesCS7A01G126900.1	Wheat	nucleus	26.72	30.51
Os02t0805250-00	Rice	nucleus	22.49	30.36
TraesCS7B01G026300.1	Wheat	nucleus	26.98	30.09
TraesCS7D01G124700.1	Wheat	nucleus	26.19	29.29
HORVU7Hr1G026560.2	Barley	nucleus	26.19	29.29
Zm00001d045212_P001	Maize	nucleus	26.19	29.2
KXG31309	Sorghum	nucleus	22.22	28.77
HORVU6Hr1G088020.4	Barley	nucleus	21.69	27.7
TraesCS6D01G357700.1	Wheat	nucleus	21.16	26.94
TraesCS6A01G373500.2	Wheat	nucleus	21.43	26.73
TraesCS6B01G411300.1	Wheat	nucleus	21.16	26.4
Zm00001d018416_P001	Maize	mitochondrion	21.69	24.85
Solyc04g007430.1.1	Tomato	nucleus	11.38	23.37
Solyc03g005350.2.1	Tomato	nucleus	13.23	16.89
Solyc06g008030.2.1	Tomato	nucleus	22.22	16.41
GSMUA_Achr7P20810_001	Banana	nucleus	25.93	16.36
Solyc09g063010.2.1	Tomato	nucleus	23.81	16.16
Solyc01g090790.2.1	Tomato	nucleus	19.58	15.95
Solyc03g115540.1.1	Tomato	nucleus	18.52	15.95
Solyc09g065820.2.1	Tomato	nucleus	12.7	15.89
Solyc09g083220.2.1	Tomato	nucleus	12.43	15.46
Solyc10g018510.1.1	Tomato	nucleus	15.87	15.35
Solyc12g010170.1.1	Tomato	nucleus	15.61	15.25
Solyc07g043580.2.1	Tomato	nucleus	19.58	14.95
Solyc06g069600.1.1	Tomato	nucleus	16.14	14.73
Solyc07g005400.2.1	Tomato	nucleus	15.87	13.64
Solyc01g102300.2.1	Tomato	nucleus	25.4	13.43

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010114	GO:GO:0010154	GO:GO:0010187	GO:GO:0046983	GO:GO:0048440
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4BDC4	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc02g093280.2	EnsemblPlants:Solyc02g093280.2.1
UniParc:UPI00027684F1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:54189626..54191963

Molecular Weight (calculated)

41873.8 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.592

Length

378 amino acids

Sequence
(BLAST)

001: MANNNVYYHN ANFSLTDPDP EPDDISVFLR HILLPSSSSS SSSSNFMALK SNEMQYSSSL PHLMPNNNQQ GNLSSMMNSS ACGIFSSSYG VCNGATTVSS
101: SSVGTIDYDP DEYECESEDG TEDLGAEASV QPPSRNTSKR SRAAEVHNLS EKRRRSRINE KMKALQKLIP NSNKTDKASM LDEAIEYLKQ LQLQVQMLTM
201: RNGLNMYPLG LPRMLQQNQL SHQKVGLCEG NAFTNAKVAG NLQVNQDASL NAIFNPTENC TETKVTPPIT MSNINRSDSA FELESSMNIH LDPFQLSRST
301: SKEIWREDDL PLYGMNELTT KTASTGSNLA FSVPLDTDAS NLKRSTREAC LLRYQFGAVN ETNLDCDQLL SQQLYSNF

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.