Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015377 | Potato | nucleus | 86.96 | 78.82 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 17.93 | 21.02 |
| Os04t0618600-01 | Rice | nucleus | 18.48 | 18.78 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 19.02 | 18.62 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 19.02 | 18.62 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 19.02 | 18.62 |
| EES11436 | Sorghum | nucleus | 19.02 | 18.62 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 19.02 | 18.62 |
| CDY35224 | Canola | nucleus | 24.46 | 17.37 |
| Zm00001d002288_P002 | Maize | nucleus | 19.57 | 16.82 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 18.48 | 14.35 |
| Solyc04g078690.2.1 | Tomato | nucleus | 22.83 | 13.38 |
| Solyc09g065820.2.1 | Tomato | nucleus | 21.2 | 12.91 |
| Solyc09g083220.2.1 | Tomato | nucleus | 20.11 | 12.17 |
| Solyc03g005350.2.1 | Tomato | nucleus | 19.57 | 12.16 |
| AT4G28815.1 | Thale cress | vacuole | 20.11 | 12.05 |
| Solyc02g093280.2.1 | Tomato | nucleus | 23.37 | 11.38 |
| Solyc12g010170.1.1 | Tomato | nucleus | 23.91 | 11.37 |
| CDY06865 | Canola | nucleus | 21.74 | 11.14 |
| CDY06870 | Canola | nucleus | 26.63 | 10.77 |
| AT4G28800.2 | Thale cress | nucleus | 25.0 | 10.07 |
| AT4G28790.1 | Thale cress | nucleus | 22.28 | 9.93 |
| Solyc03g115540.1.1 | Tomato | nucleus | 23.37 | 9.79 |
| Solyc07g005400.2.1 | Tomato | nucleus | 22.83 | 9.55 |
| CDY06867 | Canola | nucleus | 25.0 | 9.54 |
| Solyc06g069600.1.1 | Tomato | nucleus | 21.2 | 9.42 |
| Solyc09g063010.2.1 | Tomato | nucleus | 28.26 | 9.34 |
| CDY35220 | Canola | nucleus | 18.48 | 9.16 |
| Solyc01g090790.2.1 | Tomato | nucleus | 22.28 | 8.84 |
| Solyc10g018510.1.1 | Tomato | nucleus | 17.93 | 8.44 |
| Solyc06g008030.2.1 | Tomato | nucleus | 21.74 | 7.81 |
| AT4G28811.1 | Thale cress | nucleus | 22.83 | 7.72 |
| Solyc07g043580.2.1 | Tomato | nucleus | 20.11 | 7.47 |
| Bra011061.1-P | Field mustard | nucleus | 20.65 | 7.35 |
| CDY35222 | Canola | nucleus | 22.83 | 7.28 |
| Solyc01g102300.2.1 | Tomato | nucleus | 27.72 | 7.13 |
| Bra011062.1-P | Field mustard | cytosol | 16.3 | 6.55 |
Protein Annotations
| EnsemblPlants:Solyc04g007430.1.1 | EnsemblPlantsGene:Solyc04g007430.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF306 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00027669B8 | UniProt:K4BNQ0 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr4:+:1103760..1107257
Molecular Weight (calculated)
20675.2 Da
IEP (calculated)
9.711
GRAVY (calculated)
-0.144
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MLARFGVCYV AEIETNNGSG ITSRRNEDGL YQYPKASCVE MHKMNERRRR YKIAKKMKVL ETLIPNCNKS DRASVLDQAI QHIQALQHQI QVMSMDRIRG
101: STLVAAGRNQ IMQSTLHFNP YIGAIGYFFN FSNILCSNFS PMLSTGSEFP FLPLAVACNL LHPGPIMEVF TRGSASVAPL EKRV
101: STLVAAGRNQ IMQSTLHFNP YIGAIGYFFN FSNILCSNFS PMLSTGSEFP FLPLAVACNL LHPGPIMEVF TRGSASVAPL EKRV
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.