Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11436 | Sorghum | nucleus | 86.19 | 82.98 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 81.77 | 78.72 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 81.77 | 78.72 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 81.77 | 78.72 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 81.22 | 78.19 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 65.19 | 75.16 |
| Zm00001d002288_P002 | Maize | nucleus | 83.43 | 70.56 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 23.2 | 21.32 |
| CDY35224 | Canola | nucleus | 30.39 | 21.24 |
| Os07t0182200-01 | Rice | cytosol | 15.47 | 20.59 |
| Os02t0805250-00 | Rice | nucleus | 29.28 | 18.93 |
| Solyc04g007430.1.1 | Tomato | nucleus | 18.78 | 18.48 |
| PGSC0003DMT400015377 | Potato | nucleus | 19.89 | 17.73 |
| Os03t0782500-01 | Rice | nucleus | 32.6 | 14.39 |
| AT4G28815.1 | Thale cress | vacuole | 23.76 | 14.01 |
| Os12t0610200-01 | Rice | nucleus | 33.7 | 13.71 |
| Os03t0797600-01 | Rice | nucleus | 22.1 | 13.61 |
| Os07t0143200-01 | Rice | nucleus | 30.94 | 13.53 |
| CDY06865 | Canola | nucleus | 24.31 | 12.26 |
| CDY06870 | Canola | nucleus | 30.39 | 12.09 |
| AT4G28790.1 | Thale cress | nucleus | 27.07 | 11.86 |
| CDY35220 | Canola | nucleus | 24.31 | 11.86 |
| Os05t0139100-01 | Rice | nucleus | 32.04 | 11.49 |
| CDY06867 | Canola | nucleus | 29.28 | 11.0 |
| AT4G28811.1 | Thale cress | nucleus | 32.6 | 10.85 |
| Os06t0184000-00 | Rice | nucleus | 23.76 | 10.8 |
| AT4G28800.2 | Thale cress | nucleus | 26.52 | 10.5 |
| Os10t0556200-01 | Rice | nucleus | 25.41 | 9.89 |
| Os01t0286100-01 | Rice | nucleus | 34.25 | 9.73 |
| Os02t0795800-00 | Rice | endoplasmic reticulum, mitochondrion, nucleus, plastid | 14.36 | 9.29 |
| CDY35222 | Canola | nucleus | 27.62 | 8.67 |
| Bra011061.1-P | Field mustard | nucleus | 22.65 | 7.93 |
| Os06t0193400-01 | Rice | nucleus | 20.44 | 7.74 |
| Bra011062.1-P | Field mustard | cytosol | 18.23 | 7.21 |
| Os02t0564700-01 | Rice | nucleus | 20.44 | 7.06 |
| Os03t0639300-01 | Rice | nucleus | 0.55 | 0.33 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4337015 | ProteinID:BAF15807.1 | ProteinID:BAS91037.1 | ProteinID:CAE02150.2 |
| ProteinID:EEE61702.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os04g0618600 | EnsemblPlants:Os04t0618600-01 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 | UniProt:Q7FA23 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000021C879 |
| RefSeq:XP_015634978.1 | RefSeq:XP_015634979.1 | RefSeq:XP_015634980.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
basic helix-loop-helix protein 101Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). (Os04t0618600-01)
Coordinates
chr4:+:31416378..31420095
Molecular Weight (calculated)
21055.1 Da
IEP (calculated)
9.969
GRAVY (calculated)
-0.925
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARRPTPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI
101: RPSEPRPFQI THATQQRQSN VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL E
101: RPSEPRPFQI THATQQRQSN VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL E
001: MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT VSQVTAARPP VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.