Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G28800.2 | Thale cress | nucleus | 56.07 | 66.74 |
| AT4G28815.1 | Thale cress | vacuole | 34.38 | 60.91 |
| CDY06870 | Canola | nucleus | 47.24 | 56.48 |
| CDY06867 | Canola | nucleus | 47.98 | 54.15 |
| CDY06865 | Canola | nucleus | 35.66 | 54.04 |
| CDY35220 | Canola | nucleus | 35.66 | 52.29 |
| CDY35224 | Canola | nucleus | 24.45 | 51.35 |
| Bra011061.1-P | Field mustard | nucleus | 47.79 | 50.29 |
| AT4G28790.1 | Thale cress | nucleus | 33.82 | 44.55 |
| Bra011062.1-P | Field mustard | cytosol | 36.76 | 43.67 |
| CDY35222 | Canola | nucleus | 45.4 | 42.81 |
| AT2G20180.2 | Thale cress | nucleus | 36.4 | 41.42 |
| Os04t0618600-01 | Rice | nucleus | 10.85 | 32.6 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 9.19 | 31.85 |
| EES11436 | Sorghum | nucleus | 10.11 | 29.26 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 9.56 | 27.66 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 9.38 | 27.13 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 9.38 | 27.13 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 9.38 | 27.13 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 11.21 | 25.74 |
| Zm00001d002288_P002 | Maize | nucleus | 10.11 | 25.7 |
| AT5G67110.1 | Thale cress | nucleus | 9.74 | 25.24 |
| Solyc04g007430.1.1 | Tomato | nucleus | 7.72 | 22.83 |
| AT4G00050.1 | Thale cress | nucleus | 15.99 | 21.8 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 18.38 | 21.19 |
| PGSC0003DMT400015377 | Potato | nucleus | 7.9 | 21.18 |
| AT3G59060.2 | Thale cress | nucleus | 16.36 | 20.05 |
| AT2G46970.1 | Thale cress | nucleus | 15.26 | 19.95 |
| AT1G09530.3 | Thale cress | nucleus | 18.2 | 18.89 |
| AT5G58010.1 | Thale cress | nucleus | 10.29 | 18.86 |
| AT4G36930.1 | Thale cress | nucleus | 12.5 | 18.23 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 11.95 | 18.16 |
| AT3G62090.2 | Thale cress | nucleus | 11.95 | 17.91 |
| AT2G24260.1 | Thale cress | nucleus | 11.4 | 17.71 |
| AT4G02590.1 | Thale cress | nucleus | 8.82 | 15.48 |
| AT1G03040.3 | Thale cress | nucleus | 8.64 | 14.11 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:5008170 | ProteinID:AEE85547.1 | EMBL:AJ519811 | ArrayExpress:AT4G28811 |
| EnsemblPlantsGene:AT4G28811 | RefSeq:AT4G28811 | TAIR:AT4G28811 | RefSeq:AT4G28811-TAIR-G | EnsemblPlants:AT4G28811.1 | TAIR:AT4G28811.1 |
| Unigene:At.46149 | ProteinID:CAA22971.1 | ProteinID:CAB81469.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_001078462.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 | UniProt:Q8GT73 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001505599 | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH119Transcription factor bHLH119 [Source:UniProtKB/Swiss-Prot;Acc:Q8GT73]
Coordinates
chr4:+:14225208..14228071
Molecular Weight (calculated)
59689.9 Da
IEP (calculated)
8.631
GRAVY (calculated)
-0.612
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEDDIVELL WNGQVVRTSQ PQRPSSGKPS PTPPILRGSG SGSGEENAPL PLPLLQPPRP LHHQNLFIRE EEMSSWLHYS YTGVTSTPAT HPQSSVSLPP
101: PPPIAPSEDD VVELLWKSGQ VVQSIQTQRP IPPPIFRGSG SGGGEETVLP LPPLHPSHQN IFIQEDEMAS WLYHPLRQDY FSSGVASTSA TRPQSSASLA
201: PTPPPPSVPY GQIPVERRTE NFMNFLRLRG NIFSGGRVEA GPVVIESTQI GSSATPSSSA AESCVIPATH GTESRAAAIT GVSRTFAVPG LGRRGKEVAT
301: ETAGTSYSGV NKAETERVQI QPERETKITE DKKREETIAE IQGTEEAHGS TSRKRSRAAD MHNLSERRRR ERINERMKTL QELLPRCRKT DKVSMLEDVI
401: EYVKSLQLQI QMMSMGHGMM PPMMHEGNTQ QFMPHMAMGM KGMNRPPPFV PFPGKTFPRP GHMAGVGPSY PALRYPFPDT QASDLSRVHV PSLHSNPVPN
501: QPRFPAYINP YSQFVGLHQM QQPPLPLQGQ PTSQPSFSHA STSK
101: PPPIAPSEDD VVELLWKSGQ VVQSIQTQRP IPPPIFRGSG SGGGEETVLP LPPLHPSHQN IFIQEDEMAS WLYHPLRQDY FSSGVASTSA TRPQSSASLA
201: PTPPPPSVPY GQIPVERRTE NFMNFLRLRG NIFSGGRVEA GPVVIESTQI GSSATPSSSA AESCVIPATH GTESRAAAIT GVSRTFAVPG LGRRGKEVAT
301: ETAGTSYSGV NKAETERVQI QPERETKITE DKKREETIAE IQGTEEAHGS TSRKRSRAAD MHNLSERRRR ERINERMKTL QELLPRCRKT DKVSMLEDVI
401: EYVKSLQLQI QMMSMGHGMM PPMMHEGNTQ QFMPHMAMGM KGMNRPPPFV PFPGKTFPRP GHMAGVGPSY PALRYPFPDT QASDLSRVHV PSLHSNPVPN
501: QPRFPAYINP YSQFVGLHQM QQPPLPLQGQ PTSQPSFSHA STSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.