Factsheet for TraesCS2D01G461900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G461700.3	Wheat	nucleus	95.54	79.79
TraesCS2B01G483300.1	Wheat	nucleus	94.9	79.26
TraesCS2A01G461700.2	Wheat	nucleus	94.9	79.26
HORVU2Hr1G104040.6	Barley	nucleus	93.63	78.19
EES11436	Sorghum	nucleus	78.98	65.96
Os04t0618600-01	Rice	nucleus	75.16	65.19
Zm00001d026317_P003	Maize	nucleus, plastid	78.98	52.32
CDY35224	Canola	nucleus	31.21	18.92
Solyc04g007430.1.1	Tomato	nucleus	21.02	17.93
TraesCS6D01G357700.1	Wheat	nucleus	30.57	16.16
PGSC0003DMT400015377	Potato	nucleus	20.38	15.76
TraesCS5D01G060300.1	Wheat	nucleus	31.85	14.29
TraesCS7D01G124700.1	Wheat	nucleus	29.3	13.61
TraesCS5D01G449200.1	Wheat	nucleus	24.2	13.52
AT4G28790.1	Thale cress	nucleus	31.85	12.11
AT4G28815.1	Thale cress	vacuole	23.57	12.05
TraesCS5D01G428400.2	Wheat	nucleus	30.57	11.48
TraesCS6D01G341200.1	Wheat	nucleus	26.11	11.45
TraesCS2D01G254400.3	Wheat	nucleus	31.21	11.4
CDY35220	Canola	nucleus	25.48	10.78
TraesCS7D01G149400.1	Wheat	nucleus	27.39	10.75
CDY06870	Canola	nucleus	29.94	10.33
CDY06865	Canola	nucleus	23.57	10.31
TraesCS1D01G084200.1	Wheat	nucleus	32.48	10.16
TraesCS5D01G386500.1	Wheat	nucleus	32.48	9.88
TraesCS1D01G215600.2	Wheat	nucleus	28.03	9.67
TraesCS5D01G233000.1	Wheat	nucleus	28.66	9.62
AT4G28811.1	Thale cress	nucleus	31.85	9.19
CDY06867	Canola	nucleus	27.39	8.92
AT4G28800.2	Thale cress	nucleus	24.84	8.53
TraesCS7D01G158300.1	Wheat	nucleus	23.57	7.71
CDY35222	Canola	nucleus	26.11	7.11
Bra011062.1-P	Field mustard	cytosol	19.75	6.77
Bra011061.1-P	Field mustard	nucleus	20.38	6.19

Protein Annotations

EnsemblPlants:TraesCS2D01G461900.1	EnsemblPlantsGene:TraesCS2D01G461900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF145	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083
MapMan:15.5.32	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:568105983..568106958

Molecular Weight (calculated)

18408.3 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.753

Length

157 amino acids

Sequence
(BLAST)

001: MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK TDKVSMLDEV IDYLKSLQLQ LQMLVMGKGM AHVVPPELQQ YMHYITTDPA
101: AQLMQMPPSE PPQPFQITHA NPPQRESDFL SQMQNHLHPS DQPQINFLRP HVHPCMW

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.