Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35224 | Canola | nucleus | 43.18 | 59.85 |
| CDY06870 | Canola | nucleus | 75.49 | 59.56 |
| CDY06867 | Canola | nucleus | 73.54 | 54.77 |
| Bra011061.1-P | Field mustard | nucleus | 71.31 | 49.52 |
| CDY35220 | Canola | nucleus | 47.35 | 45.82 |
| AT4G28800.2 | Thale cress | nucleus | 55.15 | 43.33 |
| CDY37185 | Canola | mitochondrion | 10.86 | 39.8 |
| CDY35222 | Canola | nucleus | 61.56 | 38.3 |
| AT4G28815.1 | Thale cress | vacuole | 32.59 | 38.11 |
| AT4G28811.1 | Thale cress | nucleus | 54.04 | 35.66 |
| CDY31989 | Canola | nucleus | 40.67 | 30.67 |
| CDY05725 | Canola | nucleus | 41.5 | 29.39 |
| AT4G28790.1 | Thale cress | nucleus | 33.7 | 29.3 |
| Os04t0618600-01 | Rice | nucleus | 12.26 | 24.31 |
| CDY67566 | Canola | nucleus, plastid | 18.38 | 24.09 |
| CDY00603 | Canola | nucleus, plastid | 18.38 | 24.09 |
| CDY24734 | Canola | plastid | 9.47 | 23.94 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 10.31 | 23.57 |
| EES11436 | Sorghum | nucleus | 11.7 | 22.34 |
| CDY01438 | Canola | nucleus, plastid | 13.37 | 22.02 |
| Zm00001d002288_P002 | Maize | nucleus | 13.09 | 21.96 |
| CDY12804 | Canola | nucleus, plastid | 13.09 | 21.76 |
| Solyc04g007430.1.1 | Tomato | nucleus | 11.14 | 21.74 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 11.14 | 21.28 |
| CDY65390 | Canola | nucleus | 12.26 | 21.05 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 10.86 | 20.74 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 10.86 | 20.74 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 10.86 | 20.74 |
| PGSC0003DMT400015377 | Potato | nucleus | 10.86 | 19.21 |
| CDX91917 | Canola | nucleus | 18.38 | 19.02 |
| CDY30375 | Canola | nucleus | 21.17 | 18.72 |
| CDX83214 | Canola | nucleus | 18.11 | 18.68 |
| CDY14866 | Canola | nucleus | 20.89 | 18.61 |
| CDX70453 | Canola | nucleus | 20.89 | 18.43 |
| CDY29961 | Canola | nucleus | 20.89 | 18.43 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 11.98 | 18.14 |
| CDX83509 | Canola | nucleus | 20.61 | 17.92 |
| CDY50911 | Canola | nucleus | 13.37 | 17.71 |
| CDY20289 | Canola | nucleus | 10.31 | 17.54 |
| CDY42809 | Canola | nucleus | 20.06 | 17.39 |
| CDX74328 | Canola | nucleus | 18.11 | 16.8 |
| CDY06026 | Canola | nucleus | 20.61 | 16.74 |
| CDX71916 | Canola | nucleus | 20.61 | 16.7 |
| CDY21498 | Canola | nucleus | 17.83 | 16.54 |
| CDY22448 | Canola | nucleus, plastid | 15.88 | 16.19 |
| CDX75629 | Canola | nucleus | 15.6 | 16.18 |
| CDX69281 | Canola | nucleus, plastid | 15.6 | 16.05 |
| CDY44048 | Canola | nucleus, plastid | 15.04 | 15.84 |
| CDX83349 | Canola | nucleus | 17.55 | 15.59 |
| CDY55014 | Canola | nucleus | 12.53 | 15.57 |
| CDY11836 | Canola | nucleus | 12.26 | 15.38 |
| CDX67873 | Canola | nucleus | 12.81 | 14.98 |
| CDY62262 | Canola | nucleus | 12.53 | 14.9 |
| CDY02785 | Canola | nucleus | 12.26 | 14.86 |
| CDX80064 | Canola | nucleus | 16.43 | 14.75 |
| CDY66254 | Canola | nucleus | 16.43 | 14.75 |
| CDX88653 | Canola | nucleus | 12.26 | 14.67 |
| CDY46133 | Canola | nucleus | 7.8 | 14.66 |
| CDY32733 | Canola | nucleus | 12.26 | 14.57 |
| CDY22636 | Canola | nucleus | 19.78 | 14.46 |
| CDY28232 | Canola | nucleus | 13.09 | 14.37 |
| CDY06358 | Canola | nucleus | 19.5 | 14.26 |
| CDY65446 | Canola | nucleus | 13.09 | 14.2 |
| CDY64745 | Canola | nucleus | 19.78 | 14.14 |
| CDX68710 | Canola | nucleus | 12.81 | 14.07 |
| CDX94963 | Canola | nucleus | 19.5 | 14.06 |
| CDY34780 | Canola | nucleus | 12.81 | 13.61 |
| CDX91293 | Canola | nucleus | 11.14 | 13.42 |
| CDY18143 | Canola | nucleus | 11.42 | 13.4 |
| CDX76819 | Canola | nucleus | 12.53 | 13.24 |
| CDX89919 | Canola | nucleus | 11.42 | 13.18 |
| CDY22062 | Canola | nucleus | 11.14 | 13.16 |
| CDY18011 | Canola | nucleus | 11.14 | 13.16 |
| CDX97278 | Canola | nucleus | 10.86 | 13.04 |
| CDY21898 | Canola | nucleus | 10.86 | 12.96 |
| CDX90930 | Canola | nucleus | 10.86 | 12.58 |
| CDX76616 | Canola | extracellular | 12.26 | 12.29 |
| CDY11401 | Canola | extracellular | 11.7 | 11.93 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 5.85 | 10.34 |
| CDY46132 | Canola | endoplasmic reticulum | 3.34 | 6.82 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078EXP2 | EnsemblPlants:CDY06865 | ProteinID:CDY06865 | ProteinID:CDY06865.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00123141001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF145 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF0F7F | InterPro:bHLH_dom | SEG:seg |
Description
BnaC01g09640D
Coordinates
chrLK031973:-:880185..882369
Molecular Weight (calculated)
39754.1 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.738
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MASWLNHHPR PGEDELNYHL FYSGLVSTPF THPQGSRPMG QVIAGRRAES FFNLSRVRGN VHTGGRVEAA AAQWVKDSTQ VGSSATPTYS APESCLTPAT
101: FTGGVAQTFA VPSLSRKVVE TVCEIAGPSS SRVSKTETEP FQMQPATADE RKRKEREEAE TGEEARGSTS RKRSRAAEMH NISERRRREK INEKMKALQE
201: LIPRCNKTDK ASTLEDAIEY MMSTGGGCMM TMMYAPNMQR FIAPSAMGMD RPPFIPFPGM ALPRQAHMEG LGPPYPPPRY PFPNVQAFDP NQSQFPGYMN
301: PYSQFVGLQQ MQQPPPPTQL QNQSLVSFSQ ASSSKEPEDQ DNKPIGKRGR ARGVSCEMS
101: FTGGVAQTFA VPSLSRKVVE TVCEIAGPSS SRVSKTETEP FQMQPATADE RKRKEREEAE TGEEARGSTS RKRSRAAEMH NISERRRREK INEKMKALQE
201: LIPRCNKTDK ASTLEDAIEY MMSTGGGCMM TMMYAPNMQR FIAPSAMGMD RPPFIPFPGM ALPRQAHMEG LGPPYPPPRY PFPNVQAFDP NQSQFPGYMN
301: PYSQFVGLQQ MQQPPPPTQL QNQSLVSFSQ ASSSKEPEDQ DNKPIGKRGR ARGVSCEMS
001: MQFDESDARV WIWFEIRRED DIVELLWQSG QVVGTNQTHR QSYDPPPILR GSGSGRGEEN APLSQPPPHL HQQNLFIQEG EMYSWLHHSY RQNYFCSELL
101: NSTPATHPQS SISLAPRQTI ATRRAENFMN FSWLRGNIFT GGRVDEAGPS FSVVRESMQV GSNTTPPSSS ATESCVIPAT EGTASRVSGT LAAHDLGRKG
201: KAVAVEAAGT PSSGVCKAET EPVQIQPATE SKLKAREETH GTEEARGSTS RKRSRTAEMH NLAERRRREK INEKMKTLQQ LIPRCNKSTK VSTLDDAIEY
301: VKSLQSQIQM MSTGQGMMSP MMNAGNTQQF MPHMAMDMNR PPPFIPFPGT SFPMPAQMAG VGPSYPAPRY PFPNIQTFDP SRVRLPSPQP NPVSNQPQFP
401: AYMNPYSQFA GPHQLQQPPP PPFQGQTTSQ LSSGQASSSK EPEDQENQPT A
101: NSTPATHPQS SISLAPRQTI ATRRAENFMN FSWLRGNIFT GGRVDEAGPS FSVVRESMQV GSNTTPPSSS ATESCVIPAT EGTASRVSGT LAAHDLGRKG
201: KAVAVEAAGT PSSGVCKAET EPVQIQPATE SKLKAREETH GTEEARGSTS RKRSRTAEMH NLAERRRREK INEKMKTLQQ LIPRCNKSTK VSTLDDAIEY
301: VKSLQSQIQM MSTGQGMMSP MMNAGNTQQF MPHMAMDMNR PPPFIPFPGT SFPMPAQMAG VGPSYPAPRY PFPNIQTFDP SRVRLPSPQP NPVSNQPQFP
401: AYMNPYSQFA GPHQLQQPPP PPFQGQTTSQ LSSGQASSSK EPEDQENQPT A
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G28800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.