Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46133 | Canola | nucleus | 81.52 | 90.05 |
| Bra032111.1-P | Field mustard | nucleus | 92.42 | 56.03 |
| CDY34780 | Canola | nucleus | 80.09 | 50.0 |
| CDX76819 | Canola | nucleus | 79.62 | 49.41 |
| CDX68710 | Canola | nucleus | 57.35 | 37.0 |
| CDY28232 | Canola | nucleus | 57.35 | 37.0 |
| CDY37185 | Canola | mitochondrion | 17.06 | 36.73 |
| CDY24734 | Canola | plastid | 16.11 | 23.94 |
| CDY11836 | Canola | nucleus | 32.23 | 23.78 |
| CDY55014 | Canola | nucleus | 32.23 | 23.53 |
| CDY02785 | Canola | nucleus | 32.23 | 22.97 |
| CDX88653 | Canola | nucleus | 32.23 | 22.67 |
| CDY62262 | Canola | nucleus | 32.23 | 22.52 |
| CDY32733 | Canola | nucleus | 32.23 | 22.52 |
| CDY18143 | Canola | nucleus | 31.75 | 21.9 |
| CDX91293 | Canola | nucleus | 30.81 | 21.81 |
| CDY21898 | Canola | nucleus | 30.81 | 21.59 |
| CDX89919 | Canola | nucleus | 31.75 | 21.54 |
| CDX97278 | Canola | nucleus | 30.33 | 21.4 |
| CDY22062 | Canola | nucleus | 30.81 | 21.38 |
| CDY18011 | Canola | nucleus | 30.33 | 21.05 |
| CDX90930 | Canola | nucleus | 30.33 | 20.65 |
| CDY12804 | Canola | nucleus, plastid | 19.43 | 18.98 |
| CDY01438 | Canola | nucleus, plastid | 19.43 | 18.81 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 17.54 | 18.23 |
| CDY67566 | Canola | nucleus, plastid | 19.91 | 15.33 |
| CDY00603 | Canola | nucleus, plastid | 19.91 | 15.33 |
| CDY65390 | Canola | nucleus | 14.69 | 14.83 |
| CDY35220 | Canola | nucleus | 24.64 | 14.02 |
| CDY35224 | Canola | nucleus | 17.06 | 13.9 |
| CDY46132 | Canola | endoplasmic reticulum | 10.9 | 13.07 |
| CDX75629 | Canola | nucleus | 20.85 | 12.72 |
| CDY44048 | Canola | nucleus, plastid | 20.38 | 12.61 |
| CDX69281 | Canola | nucleus, plastid | 20.85 | 12.61 |
| CDY22448 | Canola | nucleus, plastid | 20.38 | 12.22 |
| CDX83509 | Canola | nucleus | 23.7 | 12.11 |
| CDX91917 | Canola | nucleus | 19.91 | 12.1 |
| CDX83214 | Canola | nucleus | 19.91 | 12.07 |
| CDY30375 | Canola | nucleus | 22.75 | 11.82 |
| CDY14866 | Canola | nucleus | 22.27 | 11.66 |
| CDX70453 | Canola | nucleus | 22.27 | 11.55 |
| CDY29961 | Canola | nucleus | 22.27 | 11.55 |
| CDY42809 | Canola | nucleus | 22.27 | 11.35 |
| CDX74328 | Canola | nucleus | 19.91 | 10.85 |
| CDY06867 | Canola | nucleus | 24.64 | 10.79 |
| CDY06026 | Canola | nucleus | 21.8 | 10.41 |
| CDX71916 | Canola | nucleus | 21.8 | 10.38 |
| CDY21498 | Canola | nucleus | 18.96 | 10.34 |
| CDY06865 | Canola | nucleus | 17.54 | 10.31 |
| CDY31989 | Canola | nucleus | 23.22 | 10.29 |
| CDY06870 | Canola | nucleus | 21.8 | 10.11 |
| CDX80064 | Canola | nucleus | 18.96 | 10.0 |
| CDY05725 | Canola | nucleus | 23.7 | 9.86 |
| CDY22636 | Canola | nucleus | 22.27 | 9.57 |
| CDY06358 | Canola | nucleus | 22.27 | 9.57 |
| CDY66254 | Canola | nucleus | 18.01 | 9.5 |
| CDX67873 | Canola | nucleus | 13.74 | 9.45 |
| CDX94963 | Canola | nucleus | 22.27 | 9.44 |
| CDY64745 | Canola | nucleus | 22.27 | 9.36 |
| CDX83349 | Canola | nucleus | 17.54 | 9.16 |
| CDY65446 | Canola | nucleus | 13.74 | 8.76 |
| CDY35222 | Canola | nucleus | 23.22 | 8.49 |
| CDY50911 | Canola | nucleus | 10.43 | 8.12 |
| CDY11401 | Canola | extracellular | 11.85 | 7.1 |
| CDX76616 | Canola | extracellular | 11.85 | 6.98 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078G4H1 | UniProt:A0A078G4H1 | EnsemblPlants:CDY20289 | ProteinID:CDY20289 |
| ProteinID:CDY20289.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00012206001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF28 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF007A | InterPro:bHLH_dom | SEG:seg |
Description
BnaC04g36670DBnaC04g36670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4H1]
Coordinates
chrLK032105:-:302186..303424
Molecular Weight (calculated)
23243.2 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.627
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDSLLTPST SSHMQTSATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DVFVDSRNQQ IMMMPLSSHH QNDNVDGSSA HALYSGFSAT GSRPFHIPQG
101: SGGGPMHQQG QTQRQPQQQA SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK
201: VNLSFIFLLH S
101: SGGGPMHQQG QTQRQPQQQA SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK
201: VNLSFIFLLH S
001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
Arabidopsis Description
BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.