Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32733 | Canola | nucleus | 91.89 | 90.07 |
| CDY55014 | Canola | nucleus | 84.12 | 86.16 |
| CDY62262 | Canola | nucleus | 87.5 | 85.76 |
| CDX88653 | Canola | nucleus | 85.47 | 84.33 |
| CDY11836 | Canola | nucleus | 80.41 | 83.22 |
| AT5G58010.1 | Thale cress | nucleus | 82.09 | 81.82 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 30.07 | 43.84 |
| CDY46132 | Canola | endoplasmic reticulum | 26.01 | 43.75 |
| CDY28232 | Canola | nucleus | 44.26 | 40.06 |
| CDX68710 | Canola | nucleus | 43.58 | 39.45 |
| CDY37185 | Canola | mitochondrion | 12.84 | 38.78 |
| CDX76819 | Canola | nucleus | 43.58 | 37.94 |
| CDY34780 | Canola | nucleus | 42.91 | 37.57 |
| CDX91293 | Canola | nucleus | 36.82 | 36.58 |
| CDY21898 | Canola | nucleus | 35.81 | 35.22 |
| CDX97278 | Canola | nucleus | 35.47 | 35.12 |
| CDY18011 | Canola | nucleus | 35.81 | 34.87 |
| CDY22062 | Canola | nucleus | 35.81 | 34.87 |
| CDX90930 | Canola | nucleus | 35.47 | 33.87 |
| CDY18143 | Canola | nucleus | 34.46 | 33.33 |
| CDX89919 | Canola | nucleus | 34.46 | 32.8 |
| CDY20289 | Canola | nucleus | 22.97 | 32.23 |
| CDY46133 | Canola | nucleus | 16.89 | 26.18 |
| CDY24734 | Canola | plastid | 12.5 | 26.06 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 38.51 | 23.51 |
| Os06t0193400-01 | Rice | nucleus | 36.49 | 22.59 |
| Zm00001d016873_P001 | Maize | nucleus | 37.16 | 22.49 |
| CDY12804 | Canola | nucleus, plastid | 15.88 | 21.76 |
| KXG19523 | Sorghum | nucleus | 36.15 | 21.75 |
| KXG30460 | Sorghum | nucleus | 37.16 | 21.74 |
| Zm00001d045046_P001 | Maize | nucleus | 35.14 | 21.62 |
| CDY01438 | Canola | nucleus, plastid | 15.88 | 21.56 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 34.8 | 21.46 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 34.8 | 21.46 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 34.8 | 21.46 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 39.19 | 21.28 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 38.51 | 21.27 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 34.12 | 21.0 |
| CDY65390 | Canola | nucleus | 14.53 | 20.57 |
| Os02t0564700-01 | Rice | nucleus | 35.81 | 20.23 |
| Zm00001d037098_P003 | Maize | nucleus | 35.47 | 20.15 |
| CDY35224 | Canola | nucleus | 15.54 | 17.76 |
| CDY00603 | Canola | nucleus, plastid | 15.2 | 16.42 |
| CDY67566 | Canola | nucleus, plastid | 15.2 | 16.42 |
| CDX83214 | Canola | nucleus | 18.58 | 15.8 |
| CDX91917 | Canola | nucleus | 18.24 | 15.56 |
| CDY44048 | Canola | nucleus, plastid | 17.91 | 15.54 |
| CDY22448 | Canola | nucleus, plastid | 18.24 | 15.34 |
| CDX75629 | Canola | nucleus | 17.57 | 15.03 |
| CDX69281 | Canola | nucleus, plastid | 17.57 | 14.9 |
| CDX74328 | Canola | nucleus | 18.58 | 14.21 |
| CDY21498 | Canola | nucleus | 17.91 | 13.7 |
| CDY66254 | Canola | nucleus | 17.57 | 13.0 |
| CDX80064 | Canola | nucleus | 17.57 | 13.0 |
| CDX83349 | Canola | nucleus | 17.23 | 12.62 |
| CDX67873 | Canola | nucleus | 12.84 | 12.38 |
| CDY06865 | Canola | nucleus | 14.86 | 12.26 |
| CDY31989 | Canola | nucleus | 19.59 | 12.18 |
| CDY50911 | Canola | nucleus | 11.15 | 12.18 |
| CDY35220 | Canola | nucleus | 15.2 | 12.13 |
| CDY65446 | Canola | nucleus | 13.51 | 12.08 |
| CDY14866 | Canola | nucleus | 16.22 | 11.91 |
| CDX83509 | Canola | nucleus | 16.55 | 11.86 |
| CDY29961 | Canola | nucleus | 16.22 | 11.79 |
| CDX70453 | Canola | nucleus | 16.22 | 11.79 |
| CDY05725 | Canola | nucleus | 19.93 | 11.64 |
| CDY30375 | Canola | nucleus | 15.88 | 11.58 |
| CDY06870 | Canola | nucleus | 17.23 | 11.21 |
| CDY42809 | Canola | nucleus | 15.54 | 11.11 |
| CDY06026 | Canola | nucleus | 16.55 | 11.09 |
| CDX71916 | Canola | nucleus | 16.55 | 11.06 |
| CDY22636 | Canola | nucleus | 17.57 | 10.59 |
| CDY11401 | Canola | extracellular | 12.5 | 10.51 |
| CDX94963 | Canola | nucleus | 17.57 | 10.44 |
| CDY06358 | Canola | nucleus | 17.23 | 10.39 |
| CDY64745 | Canola | nucleus | 17.57 | 10.36 |
| CDX76616 | Canola | extracellular | 12.5 | 10.34 |
| CDY06867 | Canola | nucleus | 16.55 | 10.17 |
| CDY35222 | Canola | nucleus | 15.88 | 8.15 |
Protein Annotations
| EnsemblPlants:CDY02785 | EnsemblPlantsGene:GSBRNA2T00114957001 | Gene3D:4.10.280.10 | GO:A0A078EL96 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY02785 | ProteinID:CDY02785.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE2D20 | MapMan:15.5.32 | : |
Description
BnaC02g11040D
Coordinates
chrLK031937:-:415822..417237
Molecular Weight (calculated)
31776.5 Da
IEP (calculated)
5.790
GRAVY (calculated)
-0.627
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEEAKEEDR RQKTEEMGNE NGERKGEFIN QNNNDFFLDS MSMLSSLPPC WDSSLPPPHP PPPHSLTESG GPTIGSQDGL QGQGTVSTTS APVARQKPRV
101: RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNTNKTD KASMLDEIIE YVRFLQLQVK VLSMSRLGGA GAVGPRLNGL TSEVGARLNA LSGPCNGLNG
201: KGNATGSSNE SLRSTENRVA KLMEEDMGSA MQYLQGKGLC LMPISLATAM SSTSNHSRGA LFNPKSNVLA AEEENVAAVA APEDSSPMDD VSASKG
101: RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNTNKTD KASMLDEIIE YVRFLQLQVK VLSMSRLGGA GAVGPRLNGL TSEVGARLNA LSGPCNGLNG
201: KGNATGSSNE SLRSTENRVA KLMEEDMGSA MQYLQGKGLC LMPISLATAM SSTSNHSRGA LFNPKSNVLA AEEENVAAVA APEDSSPMDD VSASKG
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.