Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020398.1-P | Field mustard | nucleus | 81.82 | 86.79 |
| Bra002679.1-P | Field mustard | nucleus | 80.81 | 83.05 |
| CDY55014 | Canola | nucleus | 80.81 | 83.05 |
| CDY32733 | Canola | nucleus | 84.18 | 82.78 |
| CDY02785 | Canola | nucleus | 81.82 | 82.09 |
| CDY11836 | Canola | nucleus | 78.79 | 81.82 |
| CDX88653 | Canola | nucleus | 81.14 | 80.33 |
| Bra006788.1-P | Field mustard | nucleus | 80.47 | 79.67 |
| CDY62262 | Canola | nucleus | 80.81 | 79.47 |
| AT2G24260.1 | Thale cress | nucleus | 47.14 | 40.0 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 46.13 | 38.27 |
| AT4G02590.1 | Thale cress | nucleus | 35.69 | 34.19 |
| AT1G03040.3 | Thale cress | nucleus | 35.69 | 31.83 |
| AT5G67110.1 | Thale cress | nucleus | 17.51 | 24.76 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 37.71 | 23.09 |
| Os06t0193400-01 | Rice | nucleus | 36.7 | 22.8 |
| Zm00001d016873_P001 | Maize | nucleus | 37.37 | 22.7 |
| KXG19523 | Sorghum | nucleus | 36.7 | 22.15 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 35.69 | 22.08 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 35.69 | 22.08 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 35.69 | 22.08 |
| Zm00001d045046_P001 | Maize | nucleus | 35.69 | 22.04 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 39.39 | 21.83 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 35.02 | 21.62 |
| KXG30460 | Sorghum | nucleus | 36.7 | 21.54 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 38.38 | 20.92 |
| Zm00001d037098_P003 | Maize | nucleus | 36.03 | 20.54 |
| Os02t0564700-01 | Rice | nucleus | 36.03 | 20.42 |
| AT4G28815.1 | Thale cress | vacuole | 15.15 | 14.66 |
| AT4G36930.1 | Thale cress | nucleus | 17.85 | 14.21 |
| AT2G46970.1 | Thale cress | nucleus | 19.19 | 13.7 |
| AT4G00050.1 | Thale cress | nucleus | 17.85 | 13.28 |
| AT4G28790.1 | Thale cress | nucleus | 17.85 | 12.83 |
| AT3G62090.2 | Thale cress | nucleus | 15.49 | 12.67 |
| AT2G20180.2 | Thale cress | nucleus | 19.87 | 12.34 |
| AT3G59060.2 | Thale cress | nucleus | 16.16 | 10.81 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 17.17 | 10.81 |
| AT4G28800.2 | Thale cress | nucleus | 16.5 | 10.72 |
| AT4G28811.1 | Thale cress | nucleus | 18.86 | 10.29 |
| AT1G09530.3 | Thale cress | nucleus | 17.85 | 10.11 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:835913 | UniProt:A0A178UI77 | ProteinID:AED96987.1 | EMBL:AF488614 |
| ArrayExpress:AT5G58010 | EnsemblPlantsGene:AT5G58010 | RefSeq:AT5G58010 | TAIR:AT5G58010 | RefSeq:AT5G58010-TAIR-G | EnsemblPlants:AT5G58010.1 |
| TAIR:AT5G58010.1 | ProteinID:BAA97525.1 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0080147 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | Symbol:LRL3 | RefSeq:NP_200609.1 | ProteinID:OAO93379.1 | PFAM:PF00010 | PO:PO:0000256 |
| PO:PO:0000262 | PO:PO:0000282 | PO:PO:0003015 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF28 |
| UniProt:Q9LSQ3 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A63D1 | InterPro:bHLH_dom | SEG:seg |
Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
Coordinates
chr5:-:23483366..23485014
Molecular Weight (calculated)
31472.1 Da
IEP (calculated)
6.038
GRAVY (calculated)
-0.423
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.