CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016873_P001	Maize	nucleus	73.52	76.07
Os02t0564700-01	Rice	nucleus	55.93	54.01
Bra020398.1-P	Field mustard	nucleus	21.54	38.93
CDY11836	Canola	nucleus	21.94	38.81
GSMUA_Achr9P18080_001	Banana	nucleus	36.96	38.56
Bra006788.1-P	Field mustard	nucleus	22.33	37.67
CDX88653	Canola	nucleus	22.33	37.67
Bra002679.1-P	Field mustard	nucleus	21.34	37.37
CDY55014	Canola	nucleus	21.34	37.37
KXG19523	Sorghum	nucleus	36.17	37.2
CDY02785	Canola	nucleus	21.74	37.16
OQU88567	Sorghum	nucleus	20.16	36.82
AT5G58010.1	Thale cress	nucleus	21.54	36.7
KXG37359	Sorghum	nucleus	20.55	36.62
CDY62262	Canola	nucleus	21.74	36.42
CDY32733	Canola	nucleus	21.74	36.42
GSMUA_Achr3P10120_001	Banana	nucleus	37.55	34.86
VIT_11s0016g00380.t01	Wine grape	nucleus	33.99	32.09
EES05953	Sorghum	nucleus	24.51	31.55
OQU89497	Sorghum	nucleus	26.28	28.6
EER89334	Sorghum	nucleus	24.11	27.29
EES11436	Sorghum	nucleus	7.31	19.68
OQU75890	Sorghum	nucleus	10.08	17.53
KXG31309	Sorghum	nucleus	8.89	15.41
OQU88421	Sorghum	nucleus	9.29	11.38
KXG23955	Sorghum	nucleus	10.28	10.95
KXG32305	Sorghum	nucleus	12.65	10.6
OQU91282	Sorghum	nucleus	11.07	10.37
OQU92150	Sorghum	nucleus	10.47	9.87
KXG37432	Sorghum	plastid	8.89	9.34
KXG21255	Sorghum	nucleus	11.26	8.28

Protein Annotations

EnsemblPlants:KXG30460	EnsemblPlantsGene:SORBI_3004G184200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	ProteinID:KXG30460	ProteinID:KXG30460.1	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001C80D4A	UniProt:A0A194YRK2	MapMan:15.5.32	:

Description

hypothetical protein

Coordinates

chr4:-:53749137..53752741

Molecular Weight (calculated)

53230.7 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.307

Length

506 amino acids

Sequence
(BLAST)

001: MSRHPTTKQS KMGGFVDPFV PESAWPQDTM FIGSSWPAAG PAGTYLGGAG AAAPDQLHLQ NVSSSSTGAL LNGSAKEIVS LSPVEELHEQ FLSAHLPLPA
101: DDVAPQGLNF EVDSVVLSTP CAISLADSAP VVCCSSNDSS GSEQSGLPPF LLLGVGEQQP AWAPSTFPRI SSLVGEETSQ SCFGFSNHLL REASCAADAK
201: KYPQLGDLPS APLQLHDDVE FDTGKMLSFT PGLGQQLNAS TNFGDLQLSQ KEFSGLHHLN LSGQQLPSFN ATGATHNPEQ SSEVSSGKIG LNAPPFMNRQ
301: EVANGNGAAG SGAPKPRVRA RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNRTDKA SMLEEIIEYV KFLQLQVKVL SMSRLGATEA VVPLLTESQT
401: ESSGGLLLSP RSGSSGRQRA GGGSLPSSEA RDGAAFEQEV AQLMENNMTT AMQYLQSKGL CLMPIALASA ISDQKGSSSA AVQPENGGAK EMLRAVKPLG
501: SPIQGR

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.