Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006788.1-P | Field mustard | nucleus | 95.45 | 91.0 |
| CDX88653 | Canola | nucleus | 95.45 | 91.0 |
| CDY55014 | Canola | nucleus | 82.87 | 82.01 |
| CDY02785 | Canola | nucleus | 83.22 | 80.41 |
| CDY62262 | Canola | nucleus | 83.57 | 79.14 |
| CDY32733 | Canola | nucleus | 83.22 | 78.81 |
| AT5G58010.1 | Thale cress | nucleus | 81.82 | 78.79 |
| CDY46132 | Canola | endoplasmic reticulum | 25.52 | 41.48 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 29.37 | 41.38 |
| CDY28232 | Canola | nucleus | 45.1 | 39.45 |
| CDX68710 | Canola | nucleus | 44.76 | 39.14 |
| CDY37185 | Canola | mitochondrion | 12.94 | 37.76 |
| CDX76819 | Canola | nucleus | 44.41 | 37.35 |
| CDY34780 | Canola | nucleus | 44.06 | 37.28 |
| CDX91293 | Canola | nucleus | 36.01 | 34.56 |
| CDY21898 | Canola | nucleus | 35.31 | 33.55 |
| CDY22062 | Canola | nucleus | 35.31 | 33.22 |
| CDY18011 | Canola | nucleus | 35.31 | 33.22 |
| CDX97278 | Canola | nucleus | 34.62 | 33.11 |
| CDX90930 | Canola | nucleus | 34.97 | 32.26 |
| CDY20289 | Canola | nucleus | 23.78 | 32.23 |
| CDY18143 | Canola | nucleus | 33.57 | 31.37 |
| CDX89919 | Canola | nucleus | 33.57 | 30.87 |
| CDY46133 | Canola | nucleus | 17.48 | 26.18 |
| CDY24734 | Canola | plastid | 12.94 | 26.06 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 38.81 | 22.89 |
| Os06t0193400-01 | Rice | nucleus | 38.11 | 22.8 |
| Zm00001d016873_P001 | Maize | nucleus | 38.11 | 22.29 |
| KXG30460 | Sorghum | nucleus | 38.81 | 21.94 |
| KXG19523 | Sorghum | nucleus | 37.06 | 21.54 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 36.01 | 21.46 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 36.01 | 21.46 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 36.01 | 21.46 |
| Zm00001d045046_P001 | Maize | nucleus | 36.01 | 21.41 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 39.86 | 21.27 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 35.66 | 21.21 |
| CDY65390 | Canola | nucleus | 15.38 | 21.05 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 39.86 | 20.92 |
| CDY12804 | Canola | nucleus, plastid | 15.73 | 20.83 |
| CDY01438 | Canola | nucleus, plastid | 15.73 | 20.64 |
| Os02t0564700-01 | Rice | nucleus | 37.41 | 20.42 |
| Zm00001d037098_P003 | Maize | nucleus | 36.36 | 19.96 |
| CDY35224 | Canola | nucleus | 16.08 | 17.76 |
| CDY67566 | Canola | nucleus, plastid | 15.73 | 16.42 |
| CDY00603 | Canola | nucleus, plastid | 15.73 | 16.42 |
| CDX91917 | Canola | nucleus | 19.58 | 16.14 |
| CDX83214 | Canola | nucleus | 19.23 | 15.8 |
| CDY22448 | Canola | nucleus, plastid | 18.88 | 15.34 |
| CDY44048 | Canola | nucleus, plastid | 18.18 | 15.25 |
| CDX75629 | Canola | nucleus | 18.18 | 15.03 |
| CDX69281 | Canola | nucleus, plastid | 17.83 | 14.61 |
| CDX74328 | Canola | nucleus | 19.23 | 14.21 |
| CDY21498 | Canola | nucleus | 18.53 | 13.7 |
| CDY14866 | Canola | nucleus | 17.83 | 12.66 |
| CDY50911 | Canola | nucleus | 11.89 | 12.55 |
| CDY29961 | Canola | nucleus | 17.83 | 12.53 |
| CDX70453 | Canola | nucleus | 17.83 | 12.53 |
| CDX80064 | Canola | nucleus | 17.48 | 12.5 |
| CDY66254 | Canola | nucleus | 17.48 | 12.5 |
| CDY35220 | Canola | nucleus | 16.08 | 12.4 |
| CDX67873 | Canola | nucleus | 13.29 | 12.38 |
| CDX83349 | Canola | nucleus | 17.48 | 12.38 |
| CDY06865 | Canola | nucleus | 15.38 | 12.26 |
| CDY31989 | Canola | nucleus | 20.28 | 12.18 |
| CDX83509 | Canola | nucleus | 17.48 | 12.11 |
| CDY30375 | Canola | nucleus | 17.13 | 12.07 |
| CDY05725 | Canola | nucleus | 20.98 | 11.83 |
| CDY65446 | Canola | nucleus | 13.64 | 11.78 |
| CDY06870 | Canola | nucleus | 18.18 | 11.43 |
| CDY42809 | Canola | nucleus | 16.43 | 11.35 |
| CDY06026 | Canola | nucleus | 17.48 | 11.31 |
| CDX71916 | Canola | nucleus | 17.48 | 11.29 |
| CDY22636 | Canola | nucleus | 17.83 | 10.39 |
| CDY06867 | Canola | nucleus | 17.48 | 10.37 |
| CDX94963 | Canola | nucleus | 17.83 | 10.24 |
| CDY11401 | Canola | extracellular | 12.59 | 10.23 |
| CDY64745 | Canola | nucleus | 17.83 | 10.16 |
| CDX76616 | Canola | extracellular | 12.59 | 10.06 |
| CDY06358 | Canola | nucleus | 17.13 | 9.98 |
| CDY35222 | Canola | nucleus | 16.78 | 8.32 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FEX9 | UniProt:A0A078FEX9 | EnsemblPlants:CDY11836 | ProteinID:CDY11836 |
| ProteinID:CDY11836.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00060660001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF28 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE34B1 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC03g12620DBnaC03g12620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEX9]
Coordinates
chrLK032015:+:19902..21274
Molecular Weight (calculated)
30127.7 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.422
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGNGEGKG EFINQNSNGF FHDSMSMLSS LPPPWGSSLP PSPPPHSLLH ALTESGGPTT GSQDGLQHAQ GTVSTTTSPP VARQKPRVRA RRGQATDPHS
101: IAERLRRERI AERMKSLQEL VPNTNKTDKA SMLDEIIEYV RFLQLQVKVL SMSRLGAAGG IRPRLNGLTS DVGGRLNALS VPSNGVVNGN GNATGSSNGS
201: LRTTEQRVAK LMEEDMGSAM QYLQGKGLCL MPIALATAMS SSSAHSRGAL FNPTSNVVAT EEANVVVAAA PEASSPMDDV SASNKA
101: IAERLRRERI AERMKSLQEL VPNTNKTDKA SMLDEIIEYV RFLQLQVKVL SMSRLGAAGG IRPRLNGLTS DVGGRLNALS VPSNGVVNGN GNATGSSNGS
201: LRTTEQRVAK LMEEDMGSAM QYLQGKGLCL MPIALATAMS SSSAHSRGAL FNPTSNVVAT EEANVVVAAA PEASSPMDDV SASNKA
001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
Arabidopsis Description
BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.