Factsheet for VIT_11s0016g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020398.1-P	Field mustard	nucleus	21.46	41.07
GSMUA_Achr9P18080_001	Banana	nucleus	36.38	40.21
Bra002679.1-P	Field mustard	nucleus	21.64	40.14
CDY55014	Canola	nucleus	21.64	40.14
CDY11836	Canola	nucleus	21.27	39.86
AT5G58010.1	Thale cress	nucleus	21.83	39.39
CDY62262	Canola	nucleus	21.83	38.74
Bra006788.1-P	Field mustard	nucleus	21.64	38.67
CDX88653	Canola	nucleus	21.64	38.67
CDY02785	Canola	nucleus	21.27	38.51
GSMUA_Achr3P10120_001	Banana	nucleus	38.99	38.35
CDY32733	Canola	nucleus	21.08	37.42
VIT_07s0141g00220.t01	Wine grape	nucleus	19.4	35.99
Zm00001d016873_P001	Maize	nucleus	32.46	35.58
Zm00001d045046_P001	Maize	nucleus	31.9	35.55
TraesCS7A01G157700.1	Wheat	nucleus	31.53	35.21
TraesCS7B01G062100.2	Wheat	nucleus	31.53	35.21
TraesCS7D01G158300.1	Wheat	nucleus	31.53	35.21
KXG19523	Sorghum	nucleus	32.28	35.16
Os06t0193400-01	Rice	nucleus	30.78	34.52
HORVU7Hr1G032420.3	Barley	nucleus	30.97	34.51
VIT_05s0020g04620.t01	Wine grape	nucleus	20.15	34.5
Os02t0564700-01	Rice	nucleus	33.58	34.35
KXG30460	Sorghum	nucleus	32.09	33.99
VIT_14s0030g02230.t01	Wine grape	nucleus	20.9	33.84
Zm00001d037098_P003	Maize	nucleus	31.16	32.05
VIT_11s0037g00040.t01	Wine grape	nucleus	25.56	27.18
VIT_07s0005g02510.t01	Wine grape	nucleus	7.46	20.0
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	11.01	14.97
VIT_18s0001g10270.t01	Wine grape	nucleus	10.26	14.91
VIT_17s0000g06930.t01	Wine grape	nucleus	10.63	13.48
VIT_15s0021g02690.t01	Wine grape	nucleus	11.57	13.33
VIT_12s0028g01110.t01	Wine grape	nucleus	13.43	12.9
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	10.82	12.55
VIT_14s0060g00260.t01	Wine grape	nucleus	14.18	10.72

Protein Annotations

EntrezGene:100257707	wikigene:100257707	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB51365	ProteinID:CCB51365.1
UniProt:F6HGZ7	EMBL:FN595756	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100257707	wikigene:LOC100257707	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002107F54	ArrayExpress:VIT_11s0016g00380	EnsemblPlantsGene:VIT_11s0016g00380
EnsemblPlants:VIT_11s0016g00380.t01	RefSeq:XP_002277344	RefSeq:XP_002277344.2	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:396641..400909

Molecular Weight (calculated)

56733.6 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.430

Length

536 amino acids

Sequence
(BLAST)

001: MDEYLDHLFS STSWSDVNVK EGSSWICGEP SQTNGMLSDS IGIYEGDKKN SPVGMTNSNL MIEGLVTQDT SSIVLGGESD HGLGKGLLLE EAPRQQDLQN
101: TEGNSSLNGA VNGSSEVGYV GLQLNTPTST PCSLDLGSPK QLSLIGGMSR SSRPFTELDH VGCNGNEPSD FQRSVGNFQA LPPIPQLWSQ PSYGGGSSLS
201: PVMGEYKMQG FGLQGEYVDN EMDIMRNRYV GDEILQLDNI SSAIPIKGKE EQHTHPFSPS AVGPHMTMTA SGLQSLPQTT VGTASGGCNG TGKPRVRARR
301: GQATDPHSIA ERLRREKIAE RMKNLQELVP NSNKTDKASM LDEIIEYVKF LQLQVKVLSM SRLGAAEAVV PLITDGQAEG SKGLSLSPSA GQAEDICQSP
401: DQIAFEQEVV KLMESNVTMA MQYLQSKGLC LMPIALATAI SSGKAASSGT GSDEGKNGLI GGFIPNNNSS SNTSSSNTSS NSLPGIGTHH TSSDGNVLIG
501: KLSREGITTS SCNGAINKQE ELKSTSCTAR ELKAKT

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.