Factsheet for VIT_12s0028g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041156	Potato	nucleus	53.23	57.45
Solyc07g043580.2.1	Tomato	nucleus	50.36	56.77
KRH45975	Soybean	nucleus	50.0	53.14
KRG99030	Soybean	nucleus	50.54	51.55
KRH73584	Soybean	nucleus	48.57	48.22
KRH14535	Soybean	nucleus	47.31	46.98
CDY00603	Canola	nucleus, plastid	22.58	45.99
CDY67566	Canola	nucleus, plastid	22.58	45.99
Bra037742.1-P	Field mustard	nucleus	31.54	43.35
CDY30375	Canola	nucleus	31.54	43.35
CDX83509	Canola	nucleus	31.72	42.86
Bra000283.1-P	Field mustard	nucleus	31.72	42.86
CDY42809	Canola	nucleus	31.54	42.51
CDX70453	Canola	nucleus	31.0	42.51
CDY29961	Canola	nucleus	31.0	42.51
CDY14866	Canola	nucleus	29.93	41.44
AT3G59060.2	Thale cress	nucleus	31.54	39.64
CDY06026	Canola	nucleus	31.36	39.59
CDX71916	Canola	nucleus	31.36	39.5
Bra007430.1-P	Field mustard	nucleus	30.11	39.44
HORVU5Hr1G102240.3	Barley	nucleus	27.6	38.89
AT2G43010.5	Thale cress	extracellular, vacuole	32.8	38.77
Os03t0782500-01	Rice	nucleus	28.14	38.29
TraesCS5B01G422000.1	Wheat	nucleus	27.24	37.07
TraesCS5D01G428400.2	Wheat	nucleus	27.6	36.84
TraesCS5A01G420200.1	Wheat	nucleus	26.88	35.71
Zm00001d034298_P001	Maize	nucleus	26.7	35.31
TraesCS2B01G273500.1	Wheat	nucleus	22.04	34.36
TraesCS2A01G253900.2	Wheat	nucleus	21.86	34.08
HORVU2Hr1G060680.1	Barley	nucleus	21.33	32.87
Zm00001d013130_P001	Maize	nucleus	22.76	32.82
Os07t0143200-01	Rice	nucleus	23.84	32.13
OQU88421	Sorghum	nucleus	23.3	31.48
VIT_07s0005g02510.t01	Wine grape	nucleus	10.93	30.5
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	24.55	29.65
TraesCS2D01G254400.3	Wheat	nucleus	22.58	29.3
VIT_17s0000g06930.t01	Wine grape	nucleus	18.28	24.11
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	16.67	23.6
VIT_18s0001g10270.t01	Wine grape	nucleus	14.87	22.49
VIT_14s0060g00260.t01	Wine grape	nucleus	27.24	21.44
VIT_15s0021g02690.t01	Wine grape	nucleus	17.74	21.29
KXG37432	Sorghum	plastid	18.28	21.16
VIT_05s0020g04620.t01	Wine grape	nucleus	10.75	19.17
VIT_07s0141g00220.t01	Wine grape	nucleus	9.68	18.69
VIT_14s0030g02230.t01	Wine grape	nucleus	10.93	18.43
VIT_11s0037g00040.t01	Wine grape	nucleus	13.98	15.48
VIT_11s0016g00380.t01	Wine grape	nucleus	12.9	13.43

Protein Annotations

EntrezGene:100262490	wikigene:100262490	MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ProteinID:CCB47438
ProteinID:CCB47438.1	ncoils:Coil	UniProt:F6H570	EMBL:FN595235	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100262490
wikigene:LOC100262490	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353
SUPFAM:SSF47459	TIGR:TC60650	UniParc:UPI0002109AA2	ArrayExpress:VIT_12s0028g01110	EnsemblPlantsGene:VIT_12s0028g01110	EnsemblPlants:VIT_12s0028g01110.t01
unigene:Vvi.16948	RefSeq:XP_002278399	RefSeq:XP_002278399.1	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:1646990..1650483

Molecular Weight (calculated)

60872.2 Da

IEP (calculated)

8.151

GRAVY (calculated)

-0.637

Length

558 amino acids

Sequence
(BLAST)

001: MNHPLLPDWN IEGDVPVTNQ KKPMGQEHEL VELLWRNGQV VLHSQTQRKS GLAPNESKQV QKHDQTMLRN GGSCGNWSNL IQDEESISWI QYPLDDSLDK
101: EFCSNLFMEL PPNDPVQPEK PVRHSEQEKS VPSSQQPIFK HLGSPEFPGN PMPPPKFQVP GSVQQNCSSG GFGKIVNFPN FSFPGRSNLG SSKAQLGGKG
201: SGNMAQGGDA KEGSVMTVGL SHCGSNQVVN EADLSRFSSS GVGTGCLSSG HVKENVMRIV SQGDRRQTET LEPTVTSSSG GGSGSSFGRT YKQSTDTNSH
301: KRKGREAEES ECQSEAAEHE SAARNKASQR SGSTRRSRAA EVHNLSERRR RDRINEKMKA LQELIPHSNK SDKASMLDEA IEYLKSLQLQ LQLMWMGGGV
401: APMMFPGVQH YMARMGMGMC PPPLPSIHNP MHLPRVQLVD QSTSAVPPSN QPPICQTPVL NPVNYQNQMP NPNFPEQFAH YMGFHPMQTP SQPMNVFSFG
501: SQSHPMASPA TTGGTPTAAA AVDGQVGLIP VGTHAARMLL VPLHIKCAHC KMMIKAIH

Best Arabidopsis Sequence Match ( AT2G43010.2 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.