Factsheet for Bra000283.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83509	Canola	nucleus	98.79	98.79
CDY42809	Canola	nucleus	95.88	95.65
Bra037742.1-P	Field mustard	nucleus	75.3	76.6
AT2G43010.5	Thale cress	extracellular, vacuole	77.72	68.01
Bra007430.1-P	Field mustard	nucleus	58.84	57.04
KRH45975	Soybean	nucleus	43.1	33.9
Os03t0782500-01	Rice	nucleus	32.69	32.93
Solyc07g043580.2.1	Tomato	nucleus	38.74	32.32
TraesCS2B01G273500.1	Wheat	nucleus	27.84	32.12
TraesCS2A01G253900.2	Wheat	nucleus	27.84	32.12
HORVU5Hr1G102240.3	Barley	nucleus	30.75	32.07
HORVU2Hr1G060680.1	Barley	nucleus	28.09	32.04
KRG99030	Soybean	nucleus	42.37	31.99
VIT_12s0028g01110.t01	Wine grape	nucleus	42.86	31.72
KRH73584	Soybean	nucleus	42.86	31.49
PGSC0003DMT400041156	Potato	nucleus	39.23	31.33
KRH14535	Soybean	nucleus	42.13	30.96
TraesCS5B01G422000.1	Wheat	nucleus	30.27	30.49
Zm00001d034298_P001	Maize	nucleus	30.99	30.33
TraesCS5D01G428400.2	Wheat	nucleus	30.51	30.14
OQU88421	Sorghum	nucleus	28.57	28.57
TraesCS5A01G420200.1	Wheat	nucleus	29.06	28.57
Zm00001d013130_P001	Maize	nucleus	25.91	27.65
Os07t0143200-01	Rice	nucleus	27.6	27.54
TraesCS2D01G254400.3	Wheat	nucleus	28.09	26.98
Bra012133.1-P	Field mustard	nucleus, plastid	12.35	23.83
Bra011237.1-P	Field mustard	plastid	12.35	23.61
Bra037312.1-P	Field mustard	nucleus	10.9	21.53
Bra003483.1-P	Field mustard	nucleus	15.74	21.17
Bra010591.1-P	Field mustard	nucleus, plastid	16.46	19.94
Bra031668.1-P	Field mustard	nucleus	23.49	19.72
Bra011740.1-P	Field mustard	nucleus, plastid	16.46	19.21
Bra000560.1-P	Field mustard	nucleus	17.92	19.07
Bra020017.1-P	Field mustard	nucleus	22.52	18.83
Bra004489.1-P	Field mustard	nucleus	18.16	18.75
Bra036256.1-P	Field mustard	nucleus	9.93	17.98
Bra020398.1-P	Field mustard	nucleus	11.86	17.5
Bra000436.1-P	Field mustard	nucleus	16.95	17.33
Bra011061.1-P	Field mustard	nucleus	21.55	17.21
KXG37432	Sorghum	plastid	19.85	17.01
Bra002679.1-P	Field mustard	nucleus	11.86	16.95
Bra032111.1-P	Field mustard	nucleus	14.29	16.95
Bra006788.1-P	Field mustard	nucleus	12.11	16.67
Bra007863.1-P	Field mustard	nucleus	13.56	16.57
Bra018539.1-P	Field mustard	nucleus	9.93	16.14
Bra011062.1-P	Field mustard	cytosol	17.19	15.5
Bra000872.1-P	Field mustard	nucleus	11.38	15.21
Bra033368.1-P	Field mustard	nucleus	11.14	14.79
Bra007660.1-P	Field mustard	nucleus	14.53	14.22

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra000283	EnsemblPlants:Bra000283.1	EnsemblPlants:Bra000283.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4C7V5	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253FCD4	InterPro:bHLH_dom	SEG:seg

Description

AT2G43010 (E=1e-142) PIF4, SRL2 | PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor

Coordinates

chrA03:+:10331025..10332836

Molecular Weight (calculated)

46392.4 Da

IEP (calculated)

5.961

GRAVY (calculated)

-0.804

Length

413 amino acids

Sequence
(BLAST)

001: MEHQGWSFEE NYNLFNNRRF IRPQDELVEL LWRDGQVVQQ SQTHRDQTQA QVQAQKQDQE TLRSYTFLED QETVSWIQYP LDEDPFESED FTSPFFSTID
101: PLQRPASETV KHEAGPVPPD KVMPPPKFRL TDSSSGVREL GKEQYSVMTV GPSHCGSNQS QTDLDVSLTH DPSKTIDERL YSNENSSSGG SSGCSLGKNN
201: KEIACGRSIT ADRKRKHIMD TDESVSQSDA IGNNKSNQRS GSTRRSRAAE VHNLSERRRR DRINERMKAL QELIPNCIKT DKASILEEAI DYLKSLQLQL
301: QVMWMGSGMA GAAATPIMFP GVQPPPPFIR QLQSPVLLPR FPVMDGSAIQ NNPGLVCQNP VQNQVLPDRF GRYVGLFPRM QGTSQPMEMM TFGSPAGQES
401: QRTSAPKTTD GPR

Best Arabidopsis Sequence Match ( AT2G43010.2 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.