Factsheet for Bra000436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Bra012964.1-P	AT5G61380.1	11828029
AT2G46970.1	Bra035933.1-P	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83349	Canola	nucleus	99.26	99.26
CDY50911	Canola	nucleus	61.88	92.25
Bra004489.1-P	Field mustard	nucleus	73.76	74.5
AT2G46970.1	Thale cress	nucleus	73.51	71.39
Bra003483.1-P	Field mustard	nucleus	35.15	46.25
Bra007660.1-P	Field mustard	nucleus	36.63	35.07
VIT_07s0005g02510.t01	Wine grape	nucleus	13.12	26.5
KRH69138	Soybean	cytosol, nucleus, vacuole	10.4	23.33
Bra037312.1-P	Field mustard	nucleus	11.39	22.01
Bra011237.1-P	Field mustard	plastid	11.39	21.3
Bra012133.1-P	Field mustard	nucleus, plastid	10.89	20.56
Bra000560.1-P	Field mustard	nucleus	18.56	19.33
KRH33663	Soybean	nucleus	20.79	18.71
Bra010591.1-P	Field mustard	nucleus, plastid	15.59	18.48
Bra020398.1-P	Field mustard	nucleus	12.62	18.21
Bra002679.1-P	Field mustard	nucleus	12.38	17.3
Bra037742.1-P	Field mustard	nucleus	17.33	17.24
Bra007430.1-P	Field mustard	nucleus	18.07	17.14
Bra020017.1-P	Field mustard	nucleus	20.79	17.0
Bra000283.1-P	Field mustard	nucleus	17.33	16.95
Bra036256.1-P	Field mustard	nucleus	9.41	16.67
Bra011740.1-P	Field mustard	nucleus, plastid	14.6	16.67
Bra006788.1-P	Field mustard	nucleus	12.13	16.33
Bra031668.1-P	Field mustard	nucleus	19.55	16.06
KRH68348	Soybean	nucleus	20.54	16.05
KRG96615	Soybean	nucleus	20.3	15.83
TraesCS1D01G084200.1	Wheat	nucleus	19.55	15.74
TraesCS1B01G100400.2	Wheat	nucleus	19.55	15.74
Os05t0139100-01	Rice	nucleus	19.31	15.45
HORVU1Hr1G017900.1	Barley	nucleus	18.81	15.42
TraesCS1A01G083000.1	Wheat	nucleus	19.31	15.38
Bra007863.1-P	Field mustard	nucleus	12.87	15.38
Bra018539.1-P	Field mustard	nucleus	9.65	15.35
Bra032111.1-P	Field mustard	nucleus	13.12	15.23
Zm00001d024783_P001	Maize	nucleus	18.81	15.05
Zm00001d040536_P005	Maize	nucleus	20.54	14.64
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	21.29	14.5
KXG32305	Sorghum	nucleus	21.53	14.4
Bra000872.1-P	Field mustard	nucleus	10.4	13.59
PGSC0003DMT400047079	Potato	nucleus	23.76	13.56
Os01t0286100-01	Rice	nucleus	21.04	13.34
Zm00001d008205_P001	Maize	nucleus	20.79	13.17
Bra011061.1-P	Field mustard	nucleus	16.58	12.96
Solyc01g102300.2.1	Tomato	nucleus	22.77	12.87
Bra033368.1-P	Field mustard	nucleus	9.65	12.54
KXG21255	Sorghum	nucleus	20.05	11.77
Bra011062.1-P	Field mustard	cytosol	11.39	10.04

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra000436	EnsemblPlants:Bra000436.1	EnsemblPlants:Bra000436.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M4C8A8	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000253FF23	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT2G46970 (E=2e-150) PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor

Coordinates

chrA03:-:11113114..11117791

Molecular Weight (calculated)

45008.3 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.726

Length

404 amino acids

Sequence
(BLAST)

001: MGKNPYASLS QPNIISPSSS FKPKLSDQAS MELVCENGQI FAKSRRPNNN SYFQNQRTQS ILDLYETEYD EGFKKNIKNL GGSQVVPVSE SQRPQQDEDK
101: KRKINPSKTE SERDVWKRNK RFESSKLMND SLKSLKNVEV TTAPPDEQSI AVGRSAELYF ASSSMLSGGT SRDLSCCSLK KRKYGDMEEE ESTYLSNSDD
201: GSDDGKTRVT TTTRKTVAKK KRSTEVHKLS ERKRRNEISK KMCELQDLLP NCYKDDKVSL LDEAIKYMRT LQLQVQMMSM GNGIIPSTST MLAMGHYSPM
301: GLGMHMGAAA TTTSVPQFLP MNLQGTGFPR INEASSQMLS NFLNHPTGLI PNCPIFSPLE SCSHQFVVPS CFPGTHSTSF TPFSKSAPTS NLEDAMQFKG
401: SNGY

Best Arabidopsis Sequence Match ( AT2G46970.1 )
(BLAST)

001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN

Arabidopsis Description

PIL1Transcription factor PIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.