Factsheet for Bra012964.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000436.1-P
Bra004489.1-P
Bra005496.1-P
Bra009768.1-P
Bra010203.1-P
Bra013248.1-P
Bra021850.1-P
Bra022938.1-P
Bra029407.1-P
Bra036517.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Bra010203.1-P	AT1G33470.1	21798944
AT5G61380.1	Bra005496.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra021850.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra022938.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra000436.1-P	AT2G46970.1	11828029
AT5G61380.1	Bra004489.1-P	AT2G46970.1	11828029
AT5G61380.1	Bra013248.1-P	AT3G24650.1	10743655
AT5G61380.1	Bra009768.1-P	AT5G24470.1	20407420
AT5G61380.1	Bra029407.1-P	AT5G24470.1	20407420
AT5G61380.1	Bra036517.1-P	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02151	Canola	nucleus	94.1	99.09
Bra035933.1-P	Field mustard	nucleus	74.83	84.68
AT5G61380.1	Thale cress	nucleus	78.65	73.3
KRH54582	Soybean	nucleus	52.6	54.3
KRH63298	Soybean	nucleus	52.26	53.75
VIT_17s0000g06570.t01	Wine grape	nucleus	51.22	53.54
Solyc03g115770.2.1	Tomato	nucleus	50.87	53.08
PGSC0003DMT400050252	Potato	nucleus	50.35	52.63
KRH56889	Soybean	nucleus	52.08	52.17
KRH03510	Soybean	nucleus	51.91	51.64
Solyc06g069690.2.1	Tomato	nucleus	44.1	50.6
PGSC0003DMT400083086	Potato	nucleus	48.09	50.46
GSMUA_Achr9P19550_001	Banana	nucleus	38.37	41.94
GSMUA_Achr10P...	Banana	nucleus	38.72	41.14
Os02t0618200-01	Rice	nucleus	36.98	41.12
GSMUA_Achr2P04570_001	Banana	nucleus	39.06	40.98
TraesCS6B01G253900.1	Wheat	nucleus	35.76	39.92
Zm00001d017241_P002	Maize	nucleus	35.76	39.85
EES05438	Sorghum	nucleus	35.94	39.5
HORVU6Hr1G057630.1	Barley	nucleus	35.76	39.46
Zm00001d051114_P001	Maize	nucleus	36.11	38.1
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	35.94	36.83
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	35.94	36.57
Zm00001d003811_P001	Maize	cytosol	18.75	33.54
Zm00001d018818_P001	Maize	cytosol	16.84	31.91
Zm00001d043140_P001	Maize	cytosol	16.84	31.91
Zm00001d044406_P001	Maize	cytosol	16.15	30.59
Bra020263.1-P	Field mustard	nucleus	5.9	27.64
Bra004507.1-P	Field mustard	nucleus	17.01	23.79
Bra036517.1-P	Field mustard	nucleus	19.44	22.54
Bra029407.1-P	Field mustard	nucleus	19.62	22.2
Zm00001d005366_P001	Maize	cytosol	19.97	21.22
Bra002512.1-P	Field mustard	nucleus	17.71	21.07
Bra009768.1-P	Field mustard	nucleus	19.79	20.25
Bra009565.1-P	Field mustard	nucleus	20.31	16.62
Bra028861.1-P	Field mustard	nucleus	16.49	14.89
Bra040484.1-P	Field mustard	cytosol	15.8	11.04

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra012964	EnsemblPlants:Bra012964.1	EnsemblPlants:Bra012964.1-P	InterPro:CCT_domain
InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402	UniProt:M4D904	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF35	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001C0637D	SEG:seg	:	:	:

Description

AT5G61380 (E=2e-121) TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator

Coordinates

chrA03:+:21287949..21290145

Molecular Weight (calculated)

64815.5 Da

IEP (calculated)

7.155

GRAVY (calculated)

-0.838

Length

576 amino acids

Sequence
(BLAST)

001: MDLNGECKGG GGDGFIDRSR VRILLCDNDP NSLGEVFTLL SQCSYQVTSV KSARQVIDAL NAEGPDIDII LAEIDLPMAK GMKMLRYITR DKDLRRIPVI
101: MMSRQDEVPV VVKCLKLGAA DYLVKPLRTN ELLNLWTHMW RRRRMLGLAE KNMLSYEFDL VGSDPSDPNT NSTNLFSDDT DERSIRSTNP QRGSHQEKEW
201: PVPTGSVCAG DGAADGTATS TPPVAIIEPP LNHLPEPHHE PTKRNTNPAQ FSSVPKKSRL KIGESSAFFT YVKSTVNGNG SVHPGMAEKL QAVASEVINN
301: AKQTRGGRET EKNKAQGENL VNGTLERSRT LPTPMELHGS RSYQEVPNSI ERSRTLPPPM ELHGTRSCYQ EGSMDDARVA AAKDSSQFPA QNAYPYYMHG
401: VMNQVMMQSA AMMPQYGHHQ HPHCPPNHLN GMTGFPYYHH HHQMNTSLQN GHVPLQNGQM PPMVHHHHSW PQVGNHPSPN EVRVTKLDRR EEALLKFRRK
501: RNQRCFDKKI RYVNRKKLAE RRPRVKGQFV RKMNGVNVDL NGQPEPDSAD YDDEEEEDEE EEENRDSSPQ DDALGT

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.