Factsheet for Bra004507.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	Bra012964.1-P	AT5G61380.1	20407420
AT2G46790.1	Bra035933.1-P	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80047	Canola	nucleus	90.05	93.45
AT2G46790.1	Thale cress	nucleus	74.76	65.81
Bra020263.1-P	Field mustard	nucleus	12.62	42.28
Bra040484.1-P	Field mustard	cytosol	69.66	34.83
Bra036517.1-P	Field mustard	nucleus	40.05	33.2
Bra029407.1-P	Field mustard	nucleus	40.05	32.42
Bra002512.1-P	Field mustard	nucleus	36.65	31.2
Bra009768.1-P	Field mustard	nucleus	41.02	30.02
Os09t0532400-01	Rice	nucleus	40.05	26.48
TraesCS5A01G320300.1	Wheat	nucleus	38.84	26.36
HORVU5Hr1G081620.4	Barley	nucleus	39.32	26.26
TraesCS5B01G320500.1	Wheat	nucleus	38.59	26.15
EER99234	Sorghum	nucleus	39.32	25.71
Zm00001d006212_P002	Maize	nucleus	38.11	24.84
GSMUA_Achr4P04970_001	Banana	nucleus	39.08	24.69
GSMUA_Achr9P24280_001	Banana	nucleus	39.56	24.4
TraesCS5D01G326200.3	Wheat	nucleus	35.19	23.27
Zm00001d021291_P002	Maize	mitochondrion, plastid	37.86	22.98
GSMUA_Achr4P05170_001	Banana	nucleus	39.81	21.44
Bra009565.1-P	Field mustard	nucleus	35.92	21.02
Bra035933.1-P	Field mustard	nucleus	23.54	19.06
Zm00001d016258_P001	Maize	cytosol	9.47	18.84
Bra028861.1-P	Field mustard	nucleus	29.13	18.81
Bra012964.1-P	Field mustard	nucleus	23.79	17.01

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra004507	EnsemblPlants:Bra004507.1	EnsemblPlants:Bra004507.1-P	InterPro:CCT_domain
InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0010017	GO:GO:0045892	InterPro:IPR001789	InterPro:IPR010402
UniProt:M4CJX3	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF11	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001C06381	:

Description

AT2G46790 (E=1e-085) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator

Coordinates

chrA05:-:483652..485144

Molecular Weight (calculated)

45918.3 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.645

Length

412 amino acids

Sequence
(BLAST)

001: MAETMVSRIK SPEVVQWEKY LPKTVLKVLL VESDDSTRQI ITALLQKCSY KVVAVSDGLA AWETLKEKSN EIDLILTELD LPAISGFALL ALVMEHEACK
101: NIPVIMMSSE DSMTMVLKCM LKGAADYLIK PMRKNELKNL WQHVWRRLAV RDGHNGHGLS LPASQQNLED SDETSADHSD QGSGAQATTS CYGNNKLMED
201: VTMDLIGGID KRAECFYGDN TRDEYVGPEL GLSLKRSCSG SFEKQDQTTK QQKLSLSDES VGITLTCRYE NSQAAEKGEV GVEPSSSGEP KTPSESHEKL
301: RFDYGSATTS SNHENMGSSS LSGQNELSFR NQVGSESTND VKAKEQEEEG CGLSVEQRRS QREAALMKFR LKRKDRCFDK KVRYQSRKKL AEQRPRVKGQ
401: FVRAVMNSDA SK

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.