Factsheet for TraesCS5A01G320300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G227900.2
TraesCS6B01G253900.1
TraesCS6D01G207100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	TraesCS6A01G227900.2	AT5G61380.1	20407420
AT2G46790.1	TraesCS6B01G253900.1	AT5G61380.1	20407420
AT2G46790.1	TraesCS6D01G207100.2	AT5G61380.1	20407420
AT5G24470.1	TraesCS6A01G227900.2	AT5G61380.1	20407420
AT5G24470.1	TraesCS6B01G253900.1	AT5G61380.1	20407420
AT5G24470.1	TraesCS6D01G207100.2	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G320500.1	Wheat	nucleus	95.39	95.23
HORVU5Hr1G081620.4	Barley	nucleus	91.1	89.63
TraesCS5D01G326200.3	Wheat	nucleus	91.6	89.25
Os09t0532400-01	Rice	nucleus	68.37	66.61
EER99234	Sorghum	nucleus	66.72	64.29
Zm00001d006212_P002	Maize	nucleus	64.58	62.03
Zm00001d021291_P002	Maize	mitochondrion, plastid	66.23	59.2
Zm00001d016258_P001	Maize	cytosol	18.12	53.14
GSMUA_Achr9P24280_001	Banana	nucleus	43.0	39.07
Bra004507.1-P	Field mustard	nucleus	26.36	38.84
CDY41558	Canola	nucleus	26.36	38.84
AT2G46790.1	Thale cress	nucleus	28.5	36.97
GSMUA_Achr4P04970_001	Banana	nucleus	39.7	36.96
CDY59590	Canola	nucleus	29.0	36.14
CDX80047	Canola	nucleus	23.39	35.77
CDY48015	Canola	nucleus	26.52	34.92
Bra029407.1-P	Field mustard	nucleus	29.0	34.58
CDY05436	Canola	nucleus	28.67	34.46
CDY19831	Canola	nucleus	27.51	33.6
Bra036517.1-P	Field mustard	nucleus	27.51	33.6
CDX87123	Canola	nucleus	27.68	32.94
VIT_15s0048g02540.t01	Wine grape	nucleus	34.27	32.45
CDX80448	Canola	nucleus	29.65	32.32
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	29.65	32.26
Bra009768.1-P	Field mustard	nucleus	29.82	32.15
GSMUA_Achr4P05170_001	Banana	nucleus	40.36	32.03
Solyc03g081240.2.1	Tomato	nucleus	35.09	31.32
VIT_16s0098g00900.t01	Wine grape	nucleus	35.42	31.25
KRH64297	Soybean	nucleus	35.26	30.97
KRG97248	Soybean	nucleus	33.77	29.93
KRH53629	Soybean	nucleus	34.43	29.86
KRH68964	Soybean	nucleus	33.77	29.62
KRH47791	Soybean	nucleus	34.6	29.09
PGSC0003DMT400001574	Potato	nucleus	32.62	28.99
KRH06354	Soybean	nucleus	33.44	28.75
PGSC0003DMT400029402	Potato	nucleus	29.16	27.66
Solyc10g005030.2.1	Tomato	nucleus	28.83	27.13
CDX88107	Canola	plastid	29.82	26.01
TraesCS4A01G105300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.69	24.32
TraesCS2A01G081900.2	Wheat	nucleus	26.03	23.3
TraesCS4A01G200200.1	Wheat	nucleus	23.72	22.57
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	17.96	19.39
CDY27522	Canola	nucleus	27.18	19.16
Bra040484.1-P	Field mustard	cytosol	23.72	17.48

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.12740	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017
PANTHER:PTHR43874	PANTHER:PTHR43874:SF11	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:TraesCS5A01G320300
EnsemblPlants:TraesCS5A01G320300.1	TIGR:cd00156	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:-:533291207..533295087

Molecular Weight (calculated)

67087.2 Da

IEP (calculated)

5.662

GRAVY (calculated)

-0.758

Length

607 amino acids

Sequence
(BLAST)

001: MVRGGQGQGG GGVEEREVVN VDQDGREEEV RRALPMMPVR VLLAEGDDST RHVISALLRK CGYHVSAASD GVKAWELLKE KSFKIDLVLT EVELPLMSGF
101: LLLSTIMEHD ACKNIPVIMM SSNDAVSMVF KCMLKGAADF LVKPIRKNEL RNLWQHVWRK QLANGEIDVQ QIQQEENVAE QHGQKTEVTK DEHPTQNVVR
201: KNRECSEQES DAQSSCTRSE PEAESKHTNS FLEFKQITER QSSTDPKNAV ENRDPENPSD NKRKKASTGI EVVHIIDDEP KPSTPMEVDI VRTNSQGNGD
301: KWFSIPAHQL ELSLRRSDYG RTEDQEKNDT RTLNHSTSSA FSLYNCRPIS SFGNAGDAQP CSTSATHADL ENKNGDSAAP FQDKADPICH PIRVVALPVP
401: VGGLTFDGQP FWSGAPVAPL LYPQSGPPIW NSRTPVSQEV DTQATSSQQN DLAEMDCQQT ESTQRQEVLP PPTANEKHLH VEIPSDSNPQ QVSPMAGESG
501: SGSSTVLNNS LNNSGNALSG SACGSSSNRI ATPTEQCNAS DSATENPSME GSHQLSQREI ALNKFRLKRK ERCFEKKVRY QSRKLLAEQR PRVKGQFVRQ
601: DPNIQAS

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.