CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	CDX87210	AT5G61380.1	20407420
AT2G46790.1	CDY02151	AT5G61380.1	20407420
AT2G46790.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48015	Canola	nucleus	50.87	95.01
CDY41558	Canola	nucleus	37.75	78.88
CDX80047	Canola	nucleus	34.49	74.81
AT2G46790.1	Thale cress	nucleus	40.65	74.79
CDY09224	Canola	nucleus	6.04	40.62
CDY59590	Canola	nucleus	20.09	35.52
CDY19831	Canola	nucleus	20.21	35.01
CDX87123	Canola	nucleus	20.21	34.12
CDY05436	Canola	nucleus	19.98	34.06
CDX80448	Canola	nucleus	20.91	32.32
CDX80201	Canola	nucleus	17.42	31.85
CDY31578	Canola	nucleus	18.0	31.57
HORVU5Hr1G081620.4	Barley	nucleus	19.51	27.23
TraesCS5A01G320300.1	Wheat	nucleus	19.16	27.18
TraesCS5B01G320500.1	Wheat	nucleus	19.16	27.14
Os09t0532400-01	Rice	nucleus	19.28	26.65
CDX88107	Canola	plastid	21.02	26.01
EER99234	Sorghum	nucleus	18.82	25.71
GSMUA_Achr9P24280_001	Banana	nucleus	19.74	25.45
Zm00001d006212_P002	Maize	nucleus	18.58	25.32
GSMUA_Achr4P04970_001	Banana	nucleus	19.05	25.15
TraesCS5D01G326200.3	Wheat	nucleus	17.77	24.56
Zm00001d021291_P002	Maize	mitochondrion, plastid	18.0	22.83
CDY04868	Canola	nucleus	17.77	22.08
CDY55688	Canola	nucleus	17.65	22.06
GSMUA_Achr4P05170_001	Banana	nucleus	19.4	21.83
CDY10422	Canola	nucleus	17.77	21.83
CDX70344	Canola	nucleus	17.77	21.73
CDX87210	Canola	nucleus	12.31	21.16
CDY02151	Canola	nucleus	12.54	19.74
CDY64140	Canola	nucleus	12.66	19.02
Zm00001d016258_P001	Maize	cytosol	4.3	17.87

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078GQV7	UniProt:A0A078GQV7
InterPro:CCT_domain	EnsemblPlants:CDY27522	ProteinID:CDY27522	ProteinID:CDY27522.1	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf
InterPro:Cation_efflux_TMD_sf	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810
GO:GO:0006812	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00038197001	InterPro:IPR001789
InterPro:IPR010402	InterPro:IPR027469	InterPro:IPR036837	PFAM:PF00072	PFAM:PF01545	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR11562	PANTHER:PTHR11562:SF80	SMART:SM00448	SUPFAM:SSF160240
SUPFAM:SSF161111	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0004EE43A2
SEG:seg	:	:	:	:	:

Description

BnaC04g51630DBnaC04g51630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQV7]

Coordinates

chrLK032205:-:489453..494356

Molecular Weight (calculated)

94661.1 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.231

Length

861 amino acids

Sequence
(BLAST)

001: MGEVVVLSSD EGTMETMMSR GKSSEVVRWE KYLPTTVLRV LLVESDDSTR QIITALLQKC SYKVVAVSDG LAAWETLKEK THNIDLILTE LDLPAISGFA
101: LLALVLEHEA CKHIPVIMMS SQDSMTMVLK CMLRGAADYL IKPMRKNELK NLWQHVWRRL TLRGDLTANG PSLPASQQNV EDNDETCADS RYHSDHGSGS
201: QAISDNGEDK LMADVKPVVE SFDVTMDLIG GIDKRSECFY GDNTGEQHVG PELGLSLKRS CSGRSLEKNQ DESKHQKISL SDASAFSRYE NGKAGGEKAV
301: VVAVEASSSA EPKTPSESHE KLLRCDHGSA TTSSNHENIG SSSVSGQNQF IHSGKQESLF PVESNRLKAS KEVEVGSQST NEGTVTAGGQ SRSSSTREKA
401: KEEEEEGEGG VTAQQRKSER EAALMKFRMK KKDRCFGKKV RYESRKKLAE QRPRVKGQFV RAVNSDAVTS QFSANLRKLG MASSSPQHCH IIEVNPGKSV
501: EESTTSLASK ACGEAPCGFS DLNNASGDAQ ERNASMRKLC IAVVLCLLFM TVEVFGGIKA NSLAILTDAA HLLSDVAAFA ISLFSLWAAG WEATPRQTYG
601: FFRIEILGAL VSIQLIWLLT GILVYEAIIR LLSETSEVNG FLMFLVAAFG LLVNIIMAVL LGHDHGHGHG HGHDHHSHGV TVTTHHHHHG HGEDKHHHAH
701: GDDDVTEQLL EKSEKRKRNI NVQGAYLHVL GDSIQSVGVM IGGGIIWYKP EWKIVDLICT LVFSVIVLGT TINMIRSILE VLMESTPREI DATKLEKGLL
801: EMEEVVAVHE LHIWAITVGK VLLACHVNIR PEADADMVLN KVIDYIRREY NISHVTIQIE R

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.